Gene omics information

Query gene ID	Zm.17312.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	S.X.	H.G.	Please select
0.74	90.3	Zm.1818.1.S1_a_at	BM073458	hypothetical protein LOC100194358	-	5e+0	At5g48545	histidine triad family protein / HIT family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.654.1.A1_at	AY029561.1	hypothetical LOC542071	-	1e-3	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	S.X.	H.G.	Please select
0.70	87.0	Zm.16502.5.A1_at	AI586439	hypothetical protein LOC100280237	-	1e-12	At5g61780	tudor domain-containing protein / nuclease family protein	S.X.	H.G.	Please select
0.70	87.0	Zm.2940.1.A1_at	AW360572	-	-	4e-5	At1g56500	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.9514.1.A1_at	BM269476	hypothetical protein LOC100279704	-	3e-1	At2g14500	F-box family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.12244.2.S1_at	AI668243	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.15807.1.A1_at	AY111212.1	-	-	1e+0	At4g19590	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.9088.1.A1_at	CB350848	-	-	1e+0	At2g06908	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
55.4	100.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
52.9	100.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
44.8	100.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.6	96.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	3e-58	224	Zm.3683.1.A1_at	BG265450	-	-	2e+0	At3g48100	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)	C.G.	S.X.	Please select
0.04	2e-4	46	Zm.1417.3.A1_a_at	CF010509	-	-	8e-2	At4g34960	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.14815.1.S1_at	CA832194	hypothetical protein LOC100272613	-	1e+0	At3g29680	transferase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.31.3.S1_a_at	CD446711	16-kDa zein protein	-	6e-1	At5g15560	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2300.1.A1_at	AY108971.1	-	-	2e-1	At2g04550	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.16810.1.A1_at	CF053948	T-complex protein 1 subunit gamma	-	3e-32	At5g26360	chaperonin, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.11359.1.A1_at	BM349714	-	-	1e+0	At4g38810	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.201.1.A1_at	AI670148	-	-	3e+0	At2g27740	unknown protein	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.201.1.S1_at	AI670148	-	-	3e+0	At2g27740	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g39700	833966	MYB89 (myb domain protein 89)	Encodes a putative transcription factor (MYB89).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.21491.1.S1_at	AW832637	-	-	3e+0	At5g49480	ATCP1 (Ca2+-binding protein 1)	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig6479_s_at	Contig6479	-	-	4e+0	At4g11370	RHA1A	C.G.	S.X.	Please select
0.17	1e-45	184	Oryza sativa	Os.23284.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.93376.1.A1_at	DN487092	-	-	7e-5	At5g38760	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	2e-27	123	Triticum aestivum	Ta.17093.1.S1_at	CA617735	-	-	4e+0	At5g15860	ATPCME (PRENYLCYSTEINE METHYLESTERASE)	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1616710_at	CF515503	hypothetical protein LOC100248331	-	2e-8	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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