Gene omics information

Query gene ID	Zm.17295.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.17295.1.A1_at	CK347563	-	-	2e+0	At2g18050	HIS1-3 (HISTONE H1-3)	S.X.	H.G.	Please select
0.80	94.0	Zm.16394.1.S1_at	CF272871	-	-	1e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	S.X.	H.G.	Please select
0.76	91.1	Zm.5851.6.A1_a_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.67	85.8	Zm.17374.2.A1_a_at	CF637833	-	-	1e+0	At3g43490	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.19158.2.S1_a_at	BM073998	hypothetical protein LOC100273021 /// thioredoxin F-type	-	3e-11	At5g16400	ATF2	S.X.	H.G.	Please select
0.59	76.1	Zm.5908.1.A1_at	AW424447	hypothetical protein LOC100273971	-	2e-2	At1g11890	SEC22	S.X.	H.G.	Please select
0.58	75.1	Zm.1934.1.S1_s_at	AW519956	hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase	-	3e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	S.X.	H.G.	Please select
0.56	74.4	Zm.4406.1.A1_at	AI834053	splicing factor, arginine/serine-rich 12	-	2e+0	At2g26695	binding / zinc ion binding	S.X.	H.G.	Please select
0.53	69.1	Zm.5796.2.S1_at	AY107655.1	-	-	3e-18	At5g66420	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	98.2	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.2	98.0	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.7	97.2	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.4	97.0	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.0	96.7	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	9e-118	422	Zm.13837.1.A1_at	AY104223.1	hypothetical protein LOC100193655	-	6e-11	At2g43770	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.16	2e-32	139	Zm.14646.1.A1_at	CB350757	-	-	2e+0	At3g46910	ubiquitin protein ligase binding	C.G.	S.X.	Please select
0.06	2e-7	56	Zm.3790.1.A1_at	AY107835.1	-	-	3e-2	At4g05000	VPS28-2	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.8729.1.A1_at	BM339706	hypothetical protein LOC100277693	-	2e-2	At3g42310	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.17567.1.A1_at	CK369672	-	-	2e-14	At1g45150	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13682.1.A1_at	AY106889.1	-	-	5e+0	At5g62380	ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.12806.1.A1_at	CA400971	-	-	2e-1	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9977.1.S1_at	AY108587.1	hypothetical protein LOC100272895	-	8e+0	At4g03520	ATHM2	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.9720.1.A1_at	BM336624	-	-	4e+0	At5g35300	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g18050	816317	HIS1-3 (HISTONE H1-3)	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	HgAffx.17246.1.A1_at	CK350645	-	-	8e-1	At1g07790	HTB1	C.G.	S.X.	Please select
0.24	3e-34	145	Hordeum vulgare	Contig10257_at	Contig10257	-	-	5e-1	At4g01090	extra-large G-protein-related	C.G.	S.X.	Please select
0.17	4e-37	157	Oryza sativa	Os05g0586400	AK068482.1	-	Conserved hypothetical protein	2e+0	At3g11930	universal stress protein (USP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.218070.1.S1_at	pmrna33591	hypothetical protein	-	5e-1	At3g12870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	6e-50	198	Triticum aestivum	TaAffx.97845.2.S1_at	CA649933	-	-	5e-1	At5g59800	MBD7 (METHYL-CPG-BINDING DOMAIN 7)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1610126_at	CB982972	hypothetical protein LOC100256163	-	4e-31	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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