Gene omics information

Query gene ID	Zm.17287.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.17287.1.A1_at	CK144321	-	-	5e+0	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.12459.1.A1_at	BE186592	-	-	9e-6	At3g44600	CYP71 (CYCLOPHILIN71)	S.X.	H.G.	Please select
0.44	55.7	Zm.10900.1.A1_at	BM332136	-	-	1e-3	At1g20830	unknown protein	S.X.	H.G.	Please select
0.31	31.6	Zm.4046.1.S1_at	CA400292	hypothetical protein LOC100278945	-	6e-1	At4g35780	protein kinase family protein	S.X.	H.G.	Please select
0.18	11.6	Zm.10652.1.S1_at	CN844569	hypothetical protein LOC100191856	-	4e-2	At1g23040	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.10	4.6	Zm.439.1.A1_at	AF058708.1	RNA polymerase sigma factor 1	-	3e+0	At1g64860	SIGA (SIGMA FACTOR A)	S.X.	H.G.	Please select
0.09	4.0	Zm.8576.1.A1_at	BM074724	caffeic acid 3-O-methyltransferase	-	4e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.2	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.2	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	3e-135	480	Zm.7334.1.S1_at	CD975420	kinesin-like protein16	-	2e-25	At5g41310	kinesin motor protein-related	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.4871.1.A1_at	AY109978.1	growth-regulating factor 1	-	1e-18	At2g22840	AtGRF1 (GROWTH-REGULATING FACTOR 1)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.448.1.S1_at	AF126054.1	Rop3 small GTP binding protein	-	6e-8	At5g62880	ARAC10	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.3799.1.A1_at	CK367871	hypothetical protein LOC100192947	-	3e-1	At2g03310	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13692.1.A1_at	AY106771.1	hypothetical protein LOC100192833	-	1e+0	At2g20605	-	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.324.1.S1_at	AI670506	-	-	2e+1	At1g54590	splicing factor Prp18 family protein	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.324.1.A1_at	AI670506	-	-	2e+1	At1g54590	splicing factor Prp18 family protein	C.G.	S.X.	Please select
0.02	8e+0	30	ZmAffx.11.1.S1_at	U14598.1	-	-	5e-1	At3g22275	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.7790.1.A1_at	BM079920	CCT motif family protein	-	1e+0	At2g40085	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g54500	835538	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	Encodes a flavin mononucleotide-binding flavodoxin-like quinone reductase that is a primary auxin-response gene.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	Gma.4721.1.A1_s_at	AW309989	-	-	9e-1	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	HVSMEf0021L20r2_at	HVSMEf0021L20r2	-	-	3e-1	At5g03870	glutaredoxin family protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os07g0243100	AK108213.1	-	Mitochondrial import inner membrane translocasesubunit Tim10	2e+0	At5g61570	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.86721.1.A1_s_at	DN493309	hypothetical protein	-	1e+0	At4g22190	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	7e-30	131	Triticum aestivum	TaAffx.85329.1.S1_at	CA620363	-	-	4e+0	At1g48350	ribosomal protein L18 family protein	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1611450_at	CA816287	hypothetical protein LOC100261075	-	4e+0	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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