Gene omics information

Query gene ID	Zm.17280.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	S.X.	H.G.	Please select
0.67	85.8	Zm.4839.1.S1_at	AY103614.1	aldehyde dehydrogenase family 7 member A1	-	6e-33	At1g54100	ALDH7B4 (Aldehyde Dehydrogenase 7B4)	S.X.	H.G.	Please select
0.67	85.8	Zm.17282.1.S1_at	CK369877	-	-	1e+1	At5g32597	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	S.X.	H.G.	Please select
0.42	51.3	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	S.X.	H.G.	Please select
0.27	24.6	Zm.13530.1.A1_at	AY108362.1	-	-	2e-6	At1g30270	CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
53.4	100.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
46.1	100.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.2	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	769	Zm.11659.1.S1_s_at	BM379730	hypothetical protein LOC100274758	-	6e-2	At2g24550	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.8283.1.S1_at	BM073508	hypothetical protein LOC100276098	-	7e-1	At3g21865	PEX22 (peroxin 22)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.4808.1.A1_at	CK827550	-	-	4e-8	At1g16210	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.2354.1.A1_at	CK371344	hypothetical protein LOC100276103 /// hypothetical protein LOC100276361	-	3e-2	At5g28610	-	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.17471.1.S1_at	CK368008	-	-	1e+0	At4g32590	ferredoxin-related	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.9958.1.A1_at	BM333322	-	-	6e-2	At3g01320	SNL1 (SIN3-LIKE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6388.1.A1_at	CD001224	-	-	8e-3	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6388.1.S1_at	AI691656	-	-	8e-3	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4510.3.S1_at	AI734509	hypothetical protein LOC100193304	-	2e-1	At5g24879	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	38	Arabidopsis thaliana	At1g03900	839378	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	PsAffx.CL904Contig1_s_at	PsAffx.CL904Contig1	-	-	3e-1	At4g39200	40S ribosomal protein S25 (RPS25E)	C.G.	S.X.	Please select
0.11	3e-15	81	Hordeum vulgare	Contig10748_at	Contig10748	-	-	1e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.13	1e-14	81	Oryza sativa	Os03g0283400	AK064670.1	-	Conserved hypothetical protein	7e-1	At5g63300	structural constituent of ribosome	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.37134.1.A1_at	CV264346	hypothetical protein	-	1e-9	At1g62520	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	1e-12	73	Triticum aestivum	Ta.3803.1.A1_at	BJ254018	-	-	3e-1	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1608002_s_at	CF209324	hypothetical protein LOC100259302	-	4e+0	At3g13229	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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