Gene omics information

Query gene ID	Zm.17250.1.S1_at
Gene name	hypothetical protein LOC100193434
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.17250.1.S1_at	CO532037	hypothetical protein LOC100193434	-	3e+0	At1g68610	unknown protein	S.X.	H.G.	Please select
0.91	99.0	Zm.4506.1.A1_at	AI734492	transport inhibitor response 1 protein	-	4e+0	At2g29450	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	S.X.	H.G.	Please select
0.83	95.6	Zm.4505.1.A1_x_at	AY111153.1	-	-	1e+0	At1g54110	cation exchanger, putative (CAX10)	S.X.	H.G.	Please select
0.71	88.2	Zm.4509.1.A1_at	AI734502	-	-	1e+1	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.4505.1.A1_a_at	AY111153.1	cation cation antiporter	-	1e+0	At1g54110	cation exchanger, putative (CAX10)	S.X.	H.G.	Please select
0.20	14.2	Zm.12256.1.S1_at	BU049042	2-hydroxy-3-oxopropionate reductase	-	3e-9	At3g25530	GLYR1 (GLYOXYLATE REDUCTASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.6	99.4	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
20.3	99.3	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
18.8	99.2	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
17.6	99.1	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
15.7	99.0	GSM206314	Upper pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.4	98.9	GSM206296	Lower pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.6	98.8	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.2	98.2	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM206320	Lower pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.2	98.0	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	34	Zm.230.1.S1_at	L33913.1	aspartate kinase homoserine dehydrogenase2	-	3e-26	At1g31230	AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.74.1.A1_at	AI665196	Hypothetical protein LOC100193550	-	5e-8	At5g38720	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.74.1.S1_at	AI665196	Hypothetical protein LOC100193550	-	5e-8	At5g38720	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9521.1.A1_a_at	CF624102	-	-	6e+0	At2g03680	SPR1 (SPIRAL1)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9521.1.A1_x_at	CF624102	-	-	6e+0	At2g03680	SPR1 (SPIRAL1)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.7297.1.S1_at	T18738	-	-	2e-48	At5g50920	CLPC1	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6483.1.A1_at	AI692073	-	-	5e-1	At3g12650	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6489.1.A1_at	AI692084	-	-	7e-7	At5g58787	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.6048.2.A1_at	AI745933	-	-	6e-17	At2g24360	serine/threonine/tyrosine kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At1g68610	843191	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-2	38	Glycine max	Gma.9405.1.S1_at	CA802358	-	-	9e-1	At3g62090	PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2)	C.G.	S.X.	Please select
0.04	2e-2	38	Hordeum vulgare	Contig19202_at	Contig19202	-	-	1e+0	At4g29460	phospholipase A2 gamma, secretory low molecular weight	C.G.	S.X.	Please select
0.02	1e+0	34	Oryza sativa	Os02g0562700	AB110167.1	-	Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61)	7e-10	At3g25530	GLYR1 (GLYOXYLATE REDUCTASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.153996.1.A1_at	CV233388	hypothetical protein	-	2e-1	At4g17215	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	Ta.5749.2.S1_x_at	BJ226539	-	-	4e+0	At5g42200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	3e+0	30	Vitis vinifera	1611495_at	CD719876	-	-	3e-1	At4g12617	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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