CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.17225.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.17225.1.S1_at CK145275 - - 8e-1 At1g62840 unknown protein S.X. H.G.
0.43 52.8 Zm.16829.3.A1_at AY111089.1 - - 4e+0 At5g55240 caleosin-related family protein / embryo-specific protein, putative S.X. H.G.
0.40 48.5 Zm.17071.1.S1_at CF974775 hypothetical protein LOC100277116 - 4e+0 At1g01250 AP2 domain-containing transcription factor, putative S.X. H.G.
0.40 48.5 Zm.8720.2.A1_a_at BM267300 UDP-glucose-4-epimerase - 5e+0 At5g16486 - S.X. H.G.
0.36 41.3 Zm.4531.1.A1_at AI734623 - - 9e+0 At4g12617 unknown protein S.X. H.G.
0.25 21.3 Zm.2092.1.A1_at BM072795 dnaJ protein - 1e+0 At5g01390 DNAJ heat shock protein, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.2 99.8 GSM253276 ZM_8d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
29.7 99.8 GSM253275 ZM_8d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
26.4 99.7 GSM253274 ZM_8d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
23.7 99.5 GSM253262 ZM_4d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
21.4 99.4 GSM253263 ZM_4d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
21.3 99.4 GSM253264 ZM_4d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
8.3 98.0 GSM253267 ZM_4d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
8.2 98.0 GSM253265 ZM_4d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
7.2 97.8 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-5 48 Zm.16590.3.A1_at AY104237.1 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide - 2e-34 At5g51940 NRPB6A C.G. S.X.
0.01 9e-2 38 Zm.9879.2.S1_at CA404875 vignain - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.01 9e-2 38 Zm.46.1.A1_s_at BM351264 glutamine synthetase4 /// glutamine synthetase5 - 3e-43 At3g17820 ATGSKB6 C.G. S.X.
0.02 3e-1 36 Zm.2536.1.A1_at CK347523 hypothetical protein LOC100216682 - 6e+0 At5g42960 unknown protein C.G. S.X.
0.01 3e-1 36 Zm.18303.1.A1_at CF638221 hypothetical protein LOC100194374 /// hypothetical protein LOC100216708 - 5e-5 At1g08370 DCP1 (decapping 1) C.G. S.X.
0.01 3e-1 36 Zm.18303.1.A1_x_at CF638221 hypothetical protein LOC100216708 - 5e-5 At1g08370 DCP1 (decapping 1) C.G. S.X.
0.02 3e-1 36 Zm.17439.1.A1_at CK347738 hypothetical protein LOC100278297 - 6e-9 At3g06180 structural constituent of ribosome C.G. S.X.
0.01 1e+0 34 Zm.4557.1.S1_at CD436673 hypothetical protein LOC100274167 - 2e-1 At3g26490 phototropic-responsive NPH3 family protein C.G. S.X.
0.01 1e+0 34 Zm.4340.1.A1_at M76685.1 orange pericarp2 - 2e-29 At4g27070 TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At1g62840 842584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 4e+0 34 Glycine max PsAffx.psZG004xB23f_at PsAffx.psZG004xB23f - - 4e+0 At2g31725 unknown protein C.G. S.X.
0.38 3e-88 325 Hordeum vulgare Contig4282_at Contig4282 - - 2e+0 At4g09460 ATMYB6 C.G. S.X.
0.37 2e-67 258 Oryza sativa Os03g0586500 AK068097.1 - Conserved hypothetical protein 2e-1 At5g22550 unknown protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.216154.1.S1_at pmrna30765 hypothetical protein - 5e-2 At1g14900 HMGA (HIGH MOBILITY GROUP A) C.G. S.X.
0.34 6e-51 202 Triticum aestivum Ta.9102.1.S1_at CA738151 - - 2e-1 At1g15800 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1617016_at CF210834 hypothetical protein LOC100261969 - 3e-1 At1g04960 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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