Gene omics information

Query gene ID	Zm.17172.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	90.8	Zm.17172.1.A1_at	AI664919	-	-	2e+0	At1g55675	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.2906.1.S1_at	AY110115.1	somatic embryogenesis receptor-like kinase2	-	2e-51	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select
0.71	88.2	Zm.11598.1.A1_at	BM379212	-	-	1e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.737.2.A1_at	AI746142	-	-	4e-6	At5g60360	AALP (Arabidopsis aleurain-like protease)	S.X.	H.G.	Please select
0.63	81.1	Zm.5133.1.S1_at	CO526428	hypothetical protein LOC100273486	-	2e-1	At1g01710	acyl-CoA thioesterase family protein	S.X.	H.G.	Please select
0.53	69.1	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	S.X.	H.G.	Please select
0.53	69.1	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select
0.50	65.7	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.6	100.0	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
34.5	99.9	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
32.4	99.8	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
14.3	98.9	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
13.7	98.8	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
13.5	98.8	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
12.2	98.6	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
11.9	98.6	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
11.5	98.6	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
10.7	98.5	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1802	Zm.17172.1.S1_at	CD436081	-	-	2e+0	At1g55675	unknown protein	C.G.	S.X.	Please select
0.21	9e-13	73	Zm.3945.1.A1_at	CA402282	-	-	4e-1	At2g17070	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.18951.1.A1_at	CO533345	hypothetical protein LOC100272652	-	5e+0	At5g47080	CKB1	C.G.	S.X.	Please select
0.04	8e-1	34	Zm.9379.1.A1_s_at	BM268447	origin recognition complex subunit 3	-	6e+0	At5g61650	CYCP4	C.G.	S.X.	Please select
0.04	8e-1	34	Zm.9379.1.A1_at	BM268447	Origin recognition complex subunit 3	-	6e+0	At5g61650	CYCP4	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.62.1.S1_at	X55314.1	anthocyaninless2	-	6e+0	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.18307.1.S1_at	CO517671	-	-	8e-1	At5g19950	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.17846.2.A1_at	AY104691.1	60S ribosomal protein L11-1	-	4e-106	At5g45775	60S ribosomal protein L11 (RPL11D)	C.G.	S.X.	Please select
0.02	3e+0	32	ZmAffx.205.1.A1_at	AI670190	hypothetical protein LOC100276892	-	8e-1	At4g17520	nuclear RNA-binding protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g55675	2745832	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	PsAffx.psMA008xN03f_at	PsAffx.psMA008xN03f	-	-	1e-2	At5g44340	TUB4	C.G.	S.X.	Please select
0.02	9e-1	34	Hordeum vulgare	Contig2363_s_at	Contig2363	-	-	1e+0	At2g46610	arginine/serine-rich splicing factor, putative	C.G.	S.X.	Please select
0.05	1e-2	42	Oryza sativa	Os03g0180900	AK073589.1	-	ZIM domain containing protein	1e-1	At3g22275	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.218812.1.S1_at	pmrna34549	hypothetical protein	-	3e+0	At2g25685	SCRL17 (SCR-Like 17)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-1	36	Triticum aestivum	TaAffx.113405.1.S1_at	CA613391	-	-	2e+1	At5g65300	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1609264_at	CF405537	hypothetical protein LOC100246183	-	4e+0	At4g02250	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage