Gene omics information

Query gene ID	Zm.17166.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.17166.1.A1_at	CK370745	-	-	4e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	S.X.	H.G.	Please select
0.80	94.0	Zm.4406.1.A1_at	AI834053	splicing factor, arginine/serine-rich 12	-	2e+0	At2g26695	binding / zinc ion binding	S.X.	H.G.	Please select
0.73	89.9	Zm.1934.1.S1_s_at	AW519956	hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase	-	3e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.9236.1.A1_at	BM339258	-	-	8e-2	At3g01860	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.5362.1.A1_at	AW498436	hypothetical protein LOC100193109	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	S.X.	H.G.	Please select
0.31	31.6	Zm.5796.2.S1_at	AY107655.1	-	-	3e-18	At5g66420	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	98.6	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.7	98.1	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.7	98.1	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.0	98.0	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.4	97.8	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.9	97.7	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.5	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-4	46	Zm.17311.1.S1_at	CK369090	hypothetical protein LOC100275390	-	1e+0	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	C.G.	S.X.	Please select
0.04	4e-4	44	Zm.17751.1.S1_at	CK371154	-	-	1e+0	At1g14210	ribonuclease T2 family protein	C.G.	S.X.	Please select
0.04	4e-4	44	Zm.17776.1.S1_at	CK370381	-	-	1e+0	At5g28030	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.3644.1.S1_at	CO525387	hypothetical protein AY111178 /// hypothetical protein LOC100191318 /// hypothetical protein LOC100217011	-	8e-1	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.19307.1.S1_at	BM337427	-	-	6e+0	At5g58730	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.17981.1.A1_at	CK827727	hypothetical protein LOC100277738	-	5e+0	At2g47520	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.17627.1.A1_at	CK369147	hypothetical protein LOC100272868	-	3e-1	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.17564.1.S1_at	CK369792	AGG2	-	2e+0	At1g68585	unknown protein	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.17315.1.A1_at	CK369379	L-ascorbate oxidase	-	9e-2	At1g69840	band 7 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At5g65730	836702	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-3	42	Glycine max	GmaAffx.42135.1.S1_at	BQ134108	-	-	2e-1	At5g52190	sugar isomerase (SIS) domain-containing protein	C.G.	S.X.	Please select
0.05	5e-1	34	Hordeum vulgare	Contig20919_at	Contig20919	-	-	5e+0	At3g62820	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.17	2e-15	83	Oryza sativa	OsAffx.26591.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-3	42	Populus trichocarpa	PtpAffx.220607.1.S1_at	pmrna37012	hypothetical protein	-	9e-1	At5g38000	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	1e-9	63	Triticum aestivum	TaAffx.90042.1.S1_at	BQ609311	-	-	4e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.04	2e+1	28	Vitis vinifera	1621959_at	CF203829.1	-	-	1e+1	At5g25020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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