Gene omics information

Query gene ID	Zm.17158.3.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.17158.3.A1_at	BM078932	-	-	4e+0	At3g08920	rhodanese-like domain-containing protein	S.X.	H.G.	Please select
0.83	95.6	Zm.7720.1.S1_at	CK347322	-	-	2e-10	At2g21630	transport protein, putative	S.X.	H.G.	Please select
0.77	92.1	Zm.15626.1.S1_at	CA404507	-	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	S.X.	H.G.	Please select
0.77	92.1	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	S.X.	H.G.	Please select
0.73	89.9	Zm.12573.1.A1_a_at	BI233467	hypothetical protein LOC100192765 /// hypothetical protein LOC100276406	-	2e+0	At3g20450	-	S.X.	H.G.	Please select
0.67	85.8	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
75.3	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
63.7	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
55.8	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-72	272	Zm.17158.1.A1_at	CF636674	-	-	5e+0	At5g01600	ATFER1	C.G.	S.X.	Please select
0.41	3e-60	230	Zm.18528.1.A1_at	CF630784	-	-	3e+0	At2g14095	unknown protein	C.G.	S.X.	Please select
0.27	8e-58	222	Zm.14894.1.S1_at	BM332253	-	-	5e+0	At3g28120	unknown protein	C.G.	S.X.	Please select
0.33	5e-56	216	Zm.17158.2.A1_at	BM267363	-	-	3e+0	At5g47455	unknown protein	C.G.	S.X.	Please select
0.30	2e-55	214	Zm.1631.1.S1_at	BF728966	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select
0.20	1e-50	198	Zm.4359.2.A1_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.20	1e-50	198	Zm.4359.2.S1_at	AY111092.1	-	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.20	1e-50	198	Zm.4359.2.A1_a_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.20	1e-50	198	Zm.4359.2.A1_x_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g08920	820041	rhodanese-like domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	GmaAffx.22150.1.A1_at	BE823303	-	-	7e-1	At5g19560	ROPGEF10 (ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10)	C.G.	S.X.	Please select
0.05	3e-2	38	Hordeum vulgare	EBpi01_SQ005_J09_s_at	EBpi01_SQ005_J09	-	-	2e-1	At2g29490	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	OsAffx.17323.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.218900.1.S1_at	pmrna34650	hypothetical protein	-	1e+1	At3g02550	LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	1e-15	83	Triticum aestivum	TaAffx.58423.1.S1_at	CA619755	-	-	1e+1	At5g24310	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1622882_at	CD801811	hypothetical protein LOC100249995	-	7e-1	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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