Gene omics information

Query gene ID	Zm.17158.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.17158.2.A1_at	BM267363	-	-	3e+0	At5g47455	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.13869.1.S1_x_at	AF099436.1	R2R3MYB-domain protein	-	4e+0	At2g04910	glycosyl hydrolase family protein 17	S.X.	H.G.	Please select
0.67	85.8	Zm.19173.1.A1_at	CO524394	-	-	5e+0	At4g33625	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.13193.1.A1_at	CD991429	-	-	4e-6	At4g14990	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.4812.1.A1_at	BG873771	-	-	6e+0	At5g26220	ChaC-like family protein	S.X.	H.G.	Please select
0.43	52.8	Zm.17516.1.S1_at	CF623514	hypothetical protein LOC100216611	-	3e-12	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	S.X.	H.G.	Please select
0.40	48.5	Zm.3385.1.A1_at	AW066673	C2H2 zinc finger protein	-	7e-1	At4g18930	cyclic phosphodiesterase	S.X.	H.G.	Please select
0.39	45.6	Zm.2895.10.S1_a_at	AI667767	-	-	7e-30	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	S.X.	H.G.	Please select
0.35	38.9	Zm.19304.1.A1_at	CO525321	hypothetical protein LOC100192965	-	3e-1	At1g55230	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.6333.1.A1_at	AY109180.1	transaminase/ transferase, transferring nitrogenous groups	-	5e-7	At4g33680	AGD2 (ABERRANT GROWTH AND DEATH 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.8	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	6e-71	266	Zm.1631.1.S1_at	BF728966	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select
0.32	5e-62	236	Zm.17158.1.A1_at	CF636674	-	-	5e+0	At5g01600	ATFER1	C.G.	S.X.	Please select
0.33	5e-56	216	Zm.17158.3.A1_at	BM078932	-	-	4e+0	At3g08920	rhodanese-like domain-containing protein	C.G.	S.X.	Please select
0.28	3e-54	210	Zm.14894.1.S1_at	BM332253	-	-	5e+0	At3g28120	unknown protein	C.G.	S.X.	Please select
0.20	4e-50	196	Zm.4359.2.A1_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.20	4e-50	196	Zm.4359.2.S1_at	AY111092.1	-	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.20	4e-50	196	Zm.4359.2.A1_a_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.20	4e-50	196	Zm.4359.2.A1_x_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.33	2e-49	194	Zm.9804.1.A1_at	CD956095	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g47455	834795	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	HgAffx.22351.1.S1_at	BI396729	-	-	4e+0	At5g12323	unknown protein	C.G.	S.X.	Please select
0.07	2e+0	32	Hordeum vulgare	EBpi01_SQ005_J09_s_at	EBpi01_SQ005_J09	-	-	2e-1	At2g29490	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os12g0528700	9640.m03323	-	-	9e-2	At3g57160	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.202019.1.S1_at	pmrna4022	hypothetical protein	-	1e-4	At3g45030	40S ribosomal protein S20 (RPS20A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	Ta.12980.1.S1_at	CA486688	-	-	8e-1	At1g68190	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.04	2e+1	28	Vitis vinifera	1622882_at	CD801811	hypothetical protein LOC100249995	-	7e-1	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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