Gene omics information

Query gene ID	Zm.17145.1.S1_at
Gene name	transparent leaf area peptide
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.2	Zm.17145.1.S1_at	AY211982.1	transparent leaf area peptide	-	9e-1	At3g29020	MYB110 (myb domain protein 110)	S.X.	H.G.	Please select
0.83	95.6	Zm.10852.1.A1_at	BM078475	-	-	5e-1	At2g35240	plastid developmental protein DAG, putative	S.X.	H.G.	Please select
0.83	95.6	Zm.2978.1.A1_at	CF020493	-	-	4e-10	At1g18440	peptidyl-tRNA hydrolase family protein	S.X.	H.G.	Please select
0.80	94.0	Zm.12201.1.A1_at	BM379502	plastid ADP-glucose pyrophosphorylase large subunit	-	3e-13	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	S.X.	H.G.	Please select
0.79	92.8	Zm.7797.1.A1_at	BM079946	mitochondrial import inner membrane translocase subunit Tim8	-	4e+0	At5g44060	unknown protein	S.X.	H.G.	Please select
0.79	92.8	RPTR-Zm-M57289-1_s_at	RPTR-Zm-M57289-1	-	-	0			S.X.	H.G.	Please select
0.73	89.9	Zm.6217.1.A1_at	BE129797	plant-specific domain TIGR01589 family protein	-	7e-1	At1g28600	lipase, putative	S.X.	H.G.	Please select
0.71	88.2	Zm.15486.2.S1_at	AY108982.1	-	-	7e-20	At1g71270	POK (POKY POLLEN TUBE)	S.X.	H.G.	Please select
0.70	87.0	Zm.14288.1.A1_at	BM348960	-	-	1e-37	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select
0.69	86.5	Zm.140.1.A1_at	L14063.1	Zea root preferential4	-	3e+0	At1g33030	O-methyltransferase family 2 protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.7	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.4	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.5	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	34	Zm.18157.1.A1_at	CO533028	-	-	2e-1	At4g20290	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4664.1.A1_at	AI737885	fatty acid elongase	-	2e-1	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4664.3.A1_a_at	AY108266.1	fatty acid elongase	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4664.3.A1_x_at	AY108266.1	-	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4664.3.S1_at	AY108266.1	-	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4664.3.S1_x_at	AY108266.1	-	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.2267.2.S1_at	AW330896	hypothetical protein LOC100216854	-	6e+0	At4g14740	phosphoinositide binding	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16732.1.S1_at	CF045803	-	-	3e-5	At1g75020	LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.1555.1.A1_at	BM347846	-	-	2e-4	At3g14660	CYP72A13	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-1	34	Arabidopsis thaliana	At3g29020	822542	MYB110 (myb domain protein 110)	Encodes a putative transcription factor (MYB110).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.51266.1.S1_at	BM891026	-	-	7e-17	At4g05020	NDB2 (NAD(P)H dehydrogenase B2)	C.G.	S.X.	Please select
0.04	2e-3	42	Hordeum vulgare	HVSMEm0020I01r2_at	HVSMEm0020I01r2	-	-	3e+0	At4g02541	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os06g0181700	AK108355.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	1e-13	At5g25190	ethylene-responsive element-binding protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.135690.1.S1_at	CK105850	hypothetical protein	-	1e+0	At4g18940	cyclic phosphodiesterase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.56878.1.S1_at	CA641959	-	-	4e-3	At1g21980	ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1)	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1614098_at	CF608417	hypothetical protein LOC100267240	-	6e-18	At2g21050	amino acid permease, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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