Gene omics information

Query gene ID	Zm.17115.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.5767.1.A1_at	AI714844	hypothetical protein LOC100273619	-	8e-2	At3g53850	-	S.X.	H.G.	Please select
0.55	71.6	Zm.854.1.A1_at	AW066950	vesicle-associated membrane protein-associated protein A	-	1e-2	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.354.2.S1_at	U37428.1	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.18486.1.A1_at	AW461085	hypothetical protein LOC100276684	-	1e-1	At2g47760	ALG3	S.X.	H.G.	Please select
0.40	48.5	Zm.17270.1.S1_a_at	AF371274.1	zein-alpha precursor	-	5e-1	At1g06070	bZIP transcription factor, putative (bZIP69)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.2	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	6e-59	226	Zm.7016.1.A1_a_at	AY103859.1	hypothetical protein LOC100275203 /// hypothetical protein LOC100276238	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	C.G.	S.X.	Please select
0.41	6e-59	226	Zm.7016.1.A1_x_at	AY103859.1	hypothetical protein LOC100276238	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	C.G.	S.X.	Please select
0.41	6e-59	226	Zm.7016.1.A1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	C.G.	S.X.	Please select
0.37	6e-59	226	Zm.7016.1.S1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	C.G.	S.X.	Please select
0.23	1e-51	202	Zm.7016.2.A1_x_at	CF626808	-	-	5e+0	At1g54500	rubredoxin family protein	C.G.	S.X.	Please select
0.23	1e-51	202	Zm.7016.2.A1_at	CF626808	-	-	5e+0	At1g54500	rubredoxin family protein	C.G.	S.X.	Please select
0.13	3e-21	101	Zm.5778.1.A1_at	BG873747	hypothetical protein LOC100275690	-	1e-1	At5g11680	unknown protein	C.G.	S.X.	Please select
0.14	9e-12	69	Zm.2171.1.A1_at	BG841205	-	-	1e+0	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.12749.1.S1_at	CF648846	-	-	2e-1	At1g58150	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g67490	836885	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.62176.2.S1_at	BF324091	-	-	1e+1	Atcg00790	-	C.G.	S.X.	Please select
0.28	3e-52	204	Hordeum vulgare	Contig4029_x_at	Contig4029	-	-	3e+0	At5g22080	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.33	5e-23	109	Oryza sativa	OsAffx.23160.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.90753.1.S1_a_at	BU875729	hypothetical protein	-	2e-2	At2g38370	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	7e-70	264	Triticum aestivum	TaAffx.85738.1.S1_at	CA620072	-	-	2e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	C.G.	S.X.	Please select
0.15	2e-9	61	Vitis vinifera	1620549_s_at	CF206023.1	-	-	4e+0	At4g14358	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage