Gene omics information

Query gene ID	Zm.17102.1.A1_at
Gene name	Histone H3.2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.17102.1.A1_at	CD527578	Histone H3.2	-	4e-29	At1g09200	histone H3	S.X.	H.G.	Please select
0.71	88.2	Zm.7150.3.S1_at	AY109249.1	-	-	2e+0	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.71	88.2	Zm.264.2.A1_x_at	CF012670	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.13539.1.A1_at	AY108296.1	-	-	5e+0	At2g13450	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.24.2.S1_at	AJ001635.1	viviparous1	-	3e+0	At2g40765	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.10865.1.A1_at	CF638037	hypothetical protein LOC100275271	-	1e-6	At2g44090	-	S.X.	H.G.	Please select
0.34	37.2	Zm.6328.1.A1_at	AY104064.1	hypothetical protein LOC100279888	-	3e+0	At4g38060	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	97.5	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.2	97.4	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.9	97.3	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.9	97.3	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.5	97.1	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.4	97.0	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.8	96.6	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	672	Zm.14513.5.S1_at	CF633873	Histone H3.2	-	3e-29	At1g09200	histone H3	C.G.	S.X.	Please select
0.44	1e-169	595	Zm.3624.2.S1_at	CB617097	-	-	1e-31	At1g09200	histone H3	C.G.	S.X.	Please select
0.45	2e-168	591	Zm.14513.1.A1_at	CA828306	Histone H3.2	-	6e-37	At1g09200	histone H3	C.G.	S.X.	Please select
0.43	3e-167	587	Zm.14513.9.S1_at	CA403750	Histone H3.2	-	2e-9	At5g10980	histone H3	C.G.	S.X.	Please select
0.48	2e-165	581	Zm.16281.1.S1_at	BM378604	-	-	2e-18	At5g10980	histone H3	C.G.	S.X.	Please select
0.48	2e-165	581	Zm.16281.1.S1_x_at	BM378604	-	-	2e-18	At5g10980	histone H3	C.G.	S.X.	Please select
0.43	4e-160	563	Zm.16281.2.S1_at	CA409032	Histone H3.2	-	9e-21	At5g10980	histone H3	C.G.	S.X.	Please select
0.44	2e-155	547	Zm.3624.1.A1_at	BM379445	Histone H3.2	-	9e-27	At1g09200	histone H3	C.G.	S.X.	Please select
0.46	5e-147	519	Zm.16263.1.A1_at	AI691501	Histone H3.2	-	3e-32	At1g09200	histone H3	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	4e-29	129	Arabidopsis thaliana	At1g09200	837440	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	1e-88	327	Glycine max	PsAffx.C1000261_at	PsAffx.C1000261	-	-	1e-15	At5g10980	histone H3	C.G.	S.X.	Please select
0.51	0	634	Hordeum vulgare	Contig105_at	Contig105	-	-	7e-36	At1g09200	histone H3	C.G.	S.X.	Please select
0.51	0	638	Oryza sativa	Os04g0419600	CR282432	-	Histone H3	5e-21	At1g09200	histone H3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	2e-13	77	Populus trichocarpa	Ptp.1580.1.S1_x_at	AF257780.1	histone H3	-	3e-97	At4g40040	histone H3.2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	6e-161	567	Triticum aestivum	Ta.27101.7.S1_x_at	BJ221566	-	-	9e-45	At1g09200	histone H3	C.G.	S.X.	Please select
0.43	4e-48	190	Vitis vinifera	1614219_at	CF413920	similar to predicted protein	-	3e-47	At5g10400	histone H3	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage