Gene omics information

Query gene ID	Zm.17091.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.17091.1.A1_at	CF627429	-	-	1e+0	At2g18780	F-box family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.16536.1.A1_a_at	AY103592.1	hypothetical protein LOC100272866 /// spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	S.X.	H.G.	Please select
0.48	61.3	Zm.496.1.S1_at	AF236370.1	prohibitin3	-	7e-7	At5g40770	ATPHB3 (PROHIBITIN 3)	S.X.	H.G.	Please select
0.47	59.9	Zm.3086.2.A1_a_at	CF633704	alpha-1,4-glucan-protein synthase	-	5e+0	At4g11350	transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.44	55.7	Zm.16547.1.A1_at	CO520746	aldehyde dehydrogenase, dimeric NADP-preferring	-	6e+0	At3g10020	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.12836.1.S1_at	CA400077	MPPN domain containing protein	-	2e+0	At2g21220	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.16536.1.A1_at	AY103592.1	spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.6977.3.A1_at	CF626979	hypothetical protein LOC100277809	-	5e+0	At5g39720	AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)	S.X.	H.G.	Please select
0.36	41.3	Zm.5018.3.A1_at	AI668145	-	-	9e-1	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
87.5	100.0	GSM258186	B37xB73 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
49.7	100.0	GSM258177	B37xB73 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
37.2	99.9	GSM258195	B37xB73 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
23.4	99.5	GSM258181	B37 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
20.5	99.3	GSM258190	B37 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
14.6	98.9	GSM258172	B37 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
14.4	98.9	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
9.0	98.2	GSM258201	Wf9 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
6.1	97.4	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
0.1	49.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	5e-69	260	Zm.244.2.A1_at	CF630454	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	C.G.	S.X.	Please select
0.49	7e-65	246	Zm.17950.1.A1_at	CK827767	-	-	3e-1	At2g03310	unknown protein	C.G.	S.X.	Please select
0.35	7e-59	226	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	C.G.	S.X.	Please select
0.08	7e-28	123	Zm.2020.1.A1_at	AY105938.1	hypothetical protein LOC100274480	-	1e-4	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select
0.01	5e-1	34	ZmAffx.5.1.S1_at	AY372246.1	cellulose synthase catalytic subunit 12	-	4e-26	At5g17420	IRX3 (IRREGULAR XYLEM 3)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.9069.1.A1_at	BM348516	hypothetical protein LOC100216825	-	7e-5	At3g03070	NADH-ubiquinone oxidoreductase-related	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.6363.1.A1_at	BG410595	SAP-like protein BP-73	-	3e-3	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.17608.2.S1_a_at	CK370879	hypothetical protein LOC100274314	-	5e+0	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.15463.1.A1_at	CO520005	hypothetical protein LOC100279195	-	4e-18	At5g43600	UAH (UREIDOGLYCOLATE AMIDOHYDROLASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At2g18780	816393	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	GmaAffx.87793.2.S1_at	BQ740671	-	-	2e-1	At5g63500	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	Contig25674_at	Contig25674	-	-	8e+0	At5g01440	insulin-degrading enzyme-related	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os11g0423300	AK064368.1	-	Hypothetical protein	3e-2	At4g27660	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.61490.1.A1_at	BP931531	-	-	3e-139	Atmg00060	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	1e-130	466	Triticum aestivum	TaAffx.85507.1.S1_s_at	CA622147	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1615367_at	CF205999.1	hypothetical protein LOC100254890	-	1e-19	At3g02300	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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