Gene omics information

Query gene ID	Zm.1706.1.A1_at
Gene name	hypothetical protein LOC100276850
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.1706.1.A1_at	BF728433	hypothetical protein LOC100276850	-	1e+0	At5g47870	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.3900.2.A1_at	BM267197	hypothetical protein LOC100191188	-	1e-17	At3g59580	RWP-RK domain-containing protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.1007.1.S1_at	AI881371	-	-	1e+1	At2g34570	MEE21 (maternal effect embryo arrest 21)	S.X.	H.G.	Please select
0.50	65.7	Zm.1042.1.A1_at	AY105661.1	-	-	3e-1	At2g25340	ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)	S.X.	H.G.	Please select
0.50	65.7	Zm.9023.1.A1_at	AY109177.1	-	-	4e-14	At4g02480	AAA-type ATPase family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.5654.1.A1_at	BG874013	hypothetical protein LOC100280184	-	5e-1	At5g61200	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.9	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.5	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Zm.9703.1.A1_at	BM348340	hypothetical protein LOC100191161 /// hypothetical protein LOC100272965	-	5e+0	Atcg01020	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.9072.1.A1_at	BG349027	-	-	5e+0	At4g25434	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18400.1.S1_at	CO533217	-	-	2e-3	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.12708.1.S1_at	AI629588	-	-	2e-3	At2g22170	lipid-associated family protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.9546.1.A1_at	AY105569.1	hypothetical protein LOC100276154	-	2e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.8216.1.A1_at	CA400212	hypothetical protein LOC100280365	-	3e-8	At1g25350	OVA9 (ovule abortion 9)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.6848.1.A1_s_at	AI615252	elongation factor 1-gamma 2	-	9e-47	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.6848.2.A1_at	CF004955	-	-	9e-47	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.6848.2.A1_x_at	CF004955	-	-	9e-47	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g47870	834838	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psMY009iG02r_at	PsAffx.psMY009iG02r	-	-	6e-2	At5g54900	ATRBP45A (RNA-binding protein 45A)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig23354_at	Contig23354	-	-	6e+0	At5g54340	zinc finger (C2H2 type) protein-related	C.G.	S.X.	Please select
0.05	2e-4	48	Oryza sativa	Os02g0685200	AK111726.1	-	Myb, DNA-binding domain containing protein	4e+0	At5g37260	RVE2 (REVEILLE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.220395.1.S1_at	pmrna36776	-	-	7e+0	At2g20940	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e-6	54	Triticum aestivum	Ta.13811.1.S1_at	CA660679	-	-	4e+0	At3g10113	myb family transcription factor	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1618368_at	CD798797	hypothetical protein LOC100257464	-	4e+0	At5g20970	heat shock family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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