Gene omics information

Query gene ID	Zm.1693.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.1693.1.A1_at	BM382165	-	-	4e-3	At3g55670	-	S.X.	H.G.	Please select
0.56	74.4	Zm.6195.1.A1_x_at	AI668513	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	S.X.	H.G.	Please select
0.50	65.7	Zm.5825.1.A1_at	AI649790	hypothetical protein LOC100279429	-	1e-2	At1g10390	nucleoporin family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.11779.1.A1_at	CO527258	hypothetical protein LOC100217298	-	3e+0	At3g47800	aldose 1-epimerase family protein	S.X.	H.G.	Please select
0.41	49.7	Zm.14014.1.A1_at	CF050089	NADH-ubiquinone oxidoreductase 23 kDa subunit	-	2e-62	At1g79010	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.1019.1.S1_at	AI881532	-	-	3e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.485.1.A1_at	AI691349	-	-	8e-1	Atmg00140	-	S.X.	H.G.	Please select
0.39	45.6	ZmAffx.219.1.A1_at	AI670227	-	-	3e+0	At3g30430	F-box family protein	S.X.	H.G.	Please select
0.35	38.9	Zm.13841.1.S1_at	AY104076.1	-	-	2e-42	At3g62270	anion exchange family protein	S.X.	H.G.	Please select
0.32	33.4	Zm.6944.4.A1_a_at	AW498023	actin-1	-	4e-31	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.6	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.3	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.6	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	8e-52	202	Zm.16174.1.A1_at	AY107459.1	IDP155 protein	-	9e-2	At1g43970	unknown protein	C.G.	S.X.	Please select
0.39	8e-52	202	Zm.16174.1.S1_at	AY107459.1	IDP155 protein	-	9e-2	At1g43970	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.3462.1.A2_at	BG840434	-	-	1e-25	At5g08650	GTP-binding protein LepA, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.3462.1.A1_at	BM335980	-	-	1e-25	At5g08650	GTP-binding protein LepA, putative	C.G.	S.X.	Please select
0.06	4e-1	34	ZmAffx.38.1.A1_at	AI657470	-	-	2e+0	At4g04423	endo-1,3(4)-beta-glucanase	C.G.	S.X.	Please select
0.06	4e-1	34	ZmAffx.38.1.S1_at	AI657470	-	-	2e+0	At4g04423	endo-1,3(4)-beta-glucanase	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.1206.1.S1_at	AI834095	m4 protein	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8903.1.S1_at	AY236970.2	Chloride channel	-	4e-22	At5g49890	CLC-C (CHLORIDE CHANNEL C)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.2762.1.A1_at	AW067127	late embryogenesis abundant protein, group 3	-	5e+0	At3g02480	ABA-responsive protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-3	42	Arabidopsis thaliana	At3g55670	824733	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.19893.1.S1_at	CK348770	-	-	4e+0	At5g49640	unknown protein	C.G.	S.X.	Please select
0.06	2e-3	42	Hordeum vulgare	Contig9398_s_at	Contig9398	-	-	1e+0	At1g43020	unknown protein	C.G.	S.X.	Please select
0.08	5e-7	56	Oryza sativa	Os12g0428000	AK063419.1	-	Rhodanese-like domain containing protein	3e+0	At3g60010	ASK13 (ARABIDOPSIS SKP1-LIKE 13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.205922.1.S1_at	pmrna11750	hypothetical protein	-	2e+0	At3g48100	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	4e-3	42	Triticum aestivum	TaAffx.12816.1.A1_at	BQ168997	-	-	2e+0	At4g00416	MBD3	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1610111_at	CF372000	hypothetical protein LOC100256322	-	1e+0	At1g32770	ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage