CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.16923.3.A1_at

Gene name chlorophyll a-b binding protein 2

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.2 Zm.16923.3.A1_at BQ619322 chlorophyll a-b binding protein 2 - 2e-50 At2g34430 LHB1B1 S.X. H.G.
0.21 15.5 Zm.4018.1.A1_at CF637940 hypothetical protein LOC100192102 - 9e-127 At5g28840 GME (GDP-D-MANNOSE 3',5'-EPIMERASE) S.X. H.G.
0.14 7.7 Zm.2249.1.S1_at AY108383.1 transcription factor Dp-1 - 1e-20 At5g03415 DPB S.X. H.G.
0.11 5.3 Zm.10168.1.A1_at CA404699 - - 1e+0 At5g16430 - S.X. H.G.
0.10 4.6 Zm.5358.1.A1_at CF003205 ras-related protein Rab11D - 9e-1 At2g01250 60S ribosomal protein L7 (RPL7B) S.X. H.G.
0.05 1.9 Zm.5953.1.A1_at BM334343 hypothetical protein LOC100280427 - 2e+0 At5g65130 AP2 domain-containing transcription factor, putative S.X. H.G.
0.03 1.1 Zm.13266.1.S1_a_at CO534075 hypothetical protein LOC100276122 - 2e+0 At1g79780 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.3 91.7 GSM253274 ZM_8d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
2.2 91.3 GSM253275 ZM_8d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
2.2 91.3 GSM253276 ZM_8d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.2 91.3 GSM253258 ZM_2d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.1 90.8 GSM253260 ZM_2d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
2.1 90.8 GSM253263 ZM_4d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
2.1 90.8 GSM253261 ZM_2d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.1 90.8 GSM253264 ZM_4d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.0 90.2 GSM253257 ZM_2d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
2.0 90.2 GSM253256 ZM_2d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 0 971 Zm.16923.1.A1_at AI374569 hypothetical protein LOC100193833 - 7e-36 At2g34430 LHB1B1 C.G. S.X.
0.59 0 944 Zm.13239.3.S1_at BI319068 chlorophyll a-b binding protein 2 - 9e-46 At2g34420 LHB1B2 C.G. S.X.
0.57 0 934 Zm.13239.2.A1_at BG517281 hypothetical protein LOC100274453 - 1e-32 At2g34430 LHB1B1 C.G. S.X.
0.58 0 892 Zm.15442.1.A1_at BM379425 Light-harvesting chlorophyll a/b binding protein - 9e-37 At2g34420 LHB1B2 C.G. S.X.
0.39 4e-145 513 Zm.13239.1.A1_at BG320233 hypothetical LOC542287 - 4e-12 At3g27690 LHCB2.3 C.G. S.X.
0.09 2e-26 119 Zm.15835.1.A1_at U23188.1 Chlorophyll a/b-binding apoprotein CP26 precursor - 8e-10 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) C.G. S.X.
0.10 1e-21 103 Zm.1578.1.A1_at U23189.1 chlorophyll a/b-binding apoprotein CP26 precursor - 3e-15 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) C.G. S.X.
0.09 3e-7 56 Zm.892.1.A1_at CO519988 chlorophyll a-b binding protein 8 - 2e-22 At1g61520 LHCA3 C.G. S.X.
0.04 4e-6 52 Zm.14486.1.A1_at AI964508 chlorophyll a-b binding protein 6A - 6e-7 At3g54890 LHCA1 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 2e-50 200 Arabidopsis thaliana At2g34430 818006 LHB1B1 Photosystem II type I chlorophyll a/b-binding protein - - - C.G. S.X.
0.50 4e-126 452 Glycine max Gma.10882.1.S1_s_at U39475.1 chlorophyll a/b-binding protein - 2e-50 At1g29930 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) C.G. S.X.
0.58 5e-157 553 Hordeum vulgare Contig432_x_at Contig432 - - 1e-29 At2g34430 LHB1B1 C.G. S.X.
0.58 0 817 Oryza sativa Os01g0720500 U74295.1 - Chlorophyll a-b binding protein 2, chloroplastprecursor (LHCII type I CAB-2) (LHCP) 3e-21 At1g29910 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3) C.G. S.X.
0.48 1e-18 95 Populus trichocarpa Ptp.2165.1.S1_at BP930220 hypothetical protein - 2e-9 At1g29910 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3) C.G. S.X.
0.54 8e-176 617 Triticum aestivum Ta.3249.2.S1_x_at CK215785 - - 2e-37 At2g34420 LHB1B2 C.G. S.X.
0.49 7e-115 412 Vitis vinifera 1618116_s_at BQ798823 hypothetical protein LOC100252004 /// hypothetical protein LOC100241745 - 2e-71 At2g34420 LHB1B2 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage