Gene omics information

Query gene ID	Zm.16913.1.S1_at
Gene name	GT1 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.16913.1.S1_at	BQ619268	GT1 protein	-	2e-24	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	S.X.	H.G.	Please select
0.83	95.6	Zm.17408.1.A1_at	BE129731	hypothetical protein LOC100273071	-	4e-1	At2g41380	embryo-abundant protein-related	S.X.	H.G.	Please select
0.77	92.1	Zm.10811.7.S1_at	BG837489	Glycine-rich protein	-	7e-3	At4g39260	GR-RBP8	S.X.	H.G.	Please select
0.73	89.9	Zm.10812.1.A1_at	CD976050	-	-	2e-4	At2g28450	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.1100.1.S1_at	AY107948.1	-	-	4e+0	At5g37475	translation initiation factor-related	S.X.	H.G.	Please select
0.63	81.1	Zm.14513.4.S1_at	CK827180	hypothetical protein LOC100192746	-	7e-31	At1g09200	histone H3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	97.8	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.1	97.7	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.9	97.7	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM202400	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep4	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
6.2	97.4	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.2	97.4	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.3	96.9	GSM202404	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep5	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Zm.3724.3.A1_a_at	CF624766	hypothetical protein LOC100192116	-	1e+0	At2g34540	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.3724.1.A1_x_at	CF627032	Hypothetical protein LOC100192116	-	2e+0	At2g34540	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.3573.1.A1_at	CF629925	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.665.1.S1_at	AF332169.1	alpha expansin1	-	7e-13	At2g37640	EXP3	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.655.1.A1_at	AF318580.1	Glk1 protein	-	1e-6	At5g44190	GLK2 (GOLDEN2-LIKE 2)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.6446.1.A1_at	AI691796	hypothetical protein LOC100273712	-	1e-4	At1g02710	glycine-rich protein	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.6303.1.S1_at	AF064707.1	-	-	8e-27	At5g20950	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.5785.1.S1_at	BM269195	S-adenosylmethionine synthetase 1	-	1e-86	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.4068.2.A1_at	BQ619512	Ferredoxin-NADP reductase precursor	-	2e-19	At1g30510	ATRFNR2 (ROOT FNR 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	2e-24	115	Arabidopsis thaliana	At4g16370	827332	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	Encodes an oligopeptide transporter involved in metal homeostasis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e-1	40	Glycine max	GmaAffx.36972.2.S1_at	BI699120	-	-	3e+0	At5g41810	unknown protein	C.G.	S.X.	Please select
0.23	9e-139	494	Hordeum vulgare	Contig14945_at	Contig14945	-	-	8e-36	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	C.G.	S.X.	Please select
0.70	0	1798	Oryza sativa	Os.4978.1.S2_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	5e-4	48	Populus trichocarpa	PtpAffx.21103.1.S1_at	CV262518	oligopeptide transporter OPT family	-	7e-19	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	0	961	Triticum aestivum	Ta.1984.1.S1_at	BG604569	-	-	5e-32	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1618771_s_at	CD715283	hypothetical protein LOC100262843	-	3e-4	At1g25560	TEM1 (TEMPRANILLO 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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