CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.16911.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 51.3 Zm.16911.1.A1_at BM332269 - - 3e-11 At4g27230 HTA2 (histone H2A) S.X. H.G.
0.53 69.1 Zm.2903.1.A1_at CF019919 hypothetical protein LOC100274564 - 9e-8 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) S.X. H.G.
0.50 65.7 Zm.13525.1.A1_at CB278252 12-oxo-phytodienoic acid reductase - 2e+1 At5g02220 unknown protein S.X. H.G.
0.50 65.7 Zm.4204.1.S1_a_at AY103547.1 - - 2e-26 At2g24200 cytosol aminopeptidase S.X. H.G.
0.48 61.3 ZmAffx.758.1.A1_at AI746000 hypothetical protein LOC100273671 - 3e-3 At4g22260 IM (IMMUTANS) S.X. H.G.
0.46 58.4 Zm.16907.1.S1_at AI691771 - - 4e-50 At3g18000 XPL1 (XIPOTL 1) S.X. H.G.
0.44 55.7 Zm.4132.1.A1_at CO529833 hypothetical protein LOC100276765 - 4e-14 At1g16520 unknown protein S.X. H.G.
0.43 52.8 Zm.7069.1.S1_at AF036891.2 plastid starch synthase I precursor - 3e-4 At5g24300 SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1) S.X. H.G.
0.41 49.7 Zm.18678.1.A1_a_at CO522483 hypothetical protein LOC100193301 - 2e-8 At5g65510 AIL7 (AINTEGUMENTA-like 7) S.X. H.G.
0.40 48.5 Zm.19155.2.A1_x_at CO526374 - - 7e-9 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.8 GSM202290 Mo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4 94.9 GSM202296 B73xMo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3 94.7 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.2 94.5 GSM202306 Mo17xB73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.2 94.5 GSM202297 Mo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0 94.0 GSM202307 B73xMo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0 94.0 GSM202295 Mo17xB73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9 93.8 GSM202302 B73xMo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8 93.5 GSM202299 Mo17xB73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7 93.2 GSM202292 B73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 0 646 Zm.15894.1.A1_at BG873874 - - 3e-14 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.47 8e-152 535 Zm.6752.1.A1_at CK826604 splicing factor, arginine/serine-rich 2 - 2e-6 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.50 1e-144 511 Zm.14706.1.S1_at AY103710.1 - - 2e-3 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.54 2e-133 474 Zm.16259.1.A1_x_at BQ539455 hypothetical protein LOC100273269 - 1e-6 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.50 2e-127 454 Zm.16259.2.A1_x_at CD951359 hypothetical protein LOC100273269 - 4e-7 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.40 8e-121 432 Zm.13443.1.A1_at U08225.1 Histone H2A - 4e-11 At5g02560 HTA12 C.G. S.X.
0.37 5e-79 293 Zm.13002.1.S1_at CF041204 - - 1e-10 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.31 7e-78 289 Zm.888.1.S1_at CK828040 hypothetical protein LOC100216750 - 1e-7 At1g08880 H2AXA C.G. S.X.
0.27 4e-27 121 Zm.4862.1.S1_a_at CF629721 hypothetical protein LOC100273666 - 2e-27 At4g27230 HTA2 (histone H2A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-11 69 Arabidopsis thaliana At4g27230 828831 HTA2 (histone H2A) Encodes HTA2, a histone H2A protein. - - - C.G. S.X.
0.35 1e-17 91 Glycine max PsAffx.C4000035_at PsAffx.C4000035 - - 4e+0 At5g59870 HTA6 C.G. S.X.
0.50 2e-118 424 Hordeum vulgare Contig188_at Contig188 - - 9e-8 At1g08880 H2AXA C.G. S.X.
0.47 1e-110 400 Oryza sativa Os03g0279200 CA753594 - Histone H2A 1e-7 At5g02560 HTA12 C.G. S.X.
0.10 1e-5 52 Populus trichocarpa Ptp.6653.1.S1_at CV238011 histone 2 - 1e-26 At1g54690 GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) C.G. S.X.
0.60 0 718 Triticum aestivum TaAffx.85379.1.S1_s_at CA623244 - - 2e-2 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.18 2e-12 71 Vitis vinifera 1608056_at CF511408 hypothetical protein LOC100254490 - 4e-31 At1g08880 H2AXA C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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