Gene omics information

Query gene ID	Zm.16907.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.16907.1.S1_at	AI691771	-	-	4e-50	At3g18000	XPL1 (XIPOTL 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	S.X.	H.G.	Please select
0.55	71.6	Zm.2903.1.A1_at	CF019919	hypothetical protein LOC100274564	-	9e-8	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.18323.1.A1_a_at	CO532638	hypothetical protein LOC100193167	-	5e-1	At4g27120	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.13525.1.A1_at	CB278252	12-oxo-phytodienoic acid reductase	-	2e+1	At5g02220	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	98.5	GSM258184	Mo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.7	97.6	GSM258189	Oh43xMo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.0	97.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.7	97.2	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.4	97.0	GSM258183	B84 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.3	96.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM258175	Mo17 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.1	96.8	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.0	96.7	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	1e-97	357	Zm.17997.1.A1_at	CK369019	phosphoethanolamine N-methyltransferase	-	2e-22	At3g18000	XPL1 (XIPOTL 1)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.5347.1.A1_at	CO522616	-	-	1e+0	At1g65720	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.3829.1.S1_at	BM335816	-	-	1e-15	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.9081.1.A1_at	BM340497	-	-	4e-1	At5g51510	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.5726.1.A1_at	BM072874	hypothetical protein LOC100191332	-	2e-4	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.2592.1.S1_at	BM351079	hypothetical protein LOC100191248	-	1e-5	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.1192.1.A1_at	BE025301	-	-	6e+0	At3g53650	histone H2B, putative	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.1192.1.S1_at	BE025301	hypothetical protein LOC100278640	-	6e+0	At3g53650	histone H2B, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.8707.1.A1_at	BM333131	hypothetical protein LOC100272998	-	5e-5	At4g29590	methyltransferase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	4e-50	200	Arabidopsis thaliana	At3g18000	821324	XPL1 (XIPOTL 1)	Arabidopsis thaliana N-methyltransferase-like protein mRNA.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	5e-10	67	Glycine max	Gma.7085.1.S1_at	BE820335	-	-	7e-13	At3g18000	XPL1 (XIPOTL 1)	C.G.	S.X.	Please select
0.56	0	902	Hordeum vulgare	Contig4006_at	Contig4006	-	-	3e-59	At3g18000	XPL1 (XIPOTL 1)	C.G.	S.X.	Please select
0.60	0	1298	Oryza sativa	Os05g0548900	CB679719	-	Phosphoethanolamine methyltransferase	2e-57	At3g18000	XPL1 (XIPOTL 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	1e-50	202	Populus trichocarpa	PtpAffx.52747.1.A1_at	CV267203	-	-	7e-56	At1g48600	phosphoethanolamine N-methyltransferase 2, putative (NMT2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	3e-143	510	Triticum aestivum	Ta.7104.1.S1_at	CK207653	-	-	7e-39	At3g18000	XPL1 (XIPOTL 1)	C.G.	S.X.	Please select
0.27	2e-33	143	Vitis vinifera	1622556_at	CB972747	hypothetical protein LOC100254279	-	6e-59	At1g73600	methyltransferase/ phosphoethanolamine N-methyltransferase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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