Gene omics information

Query gene ID	Zm.16854.1.S1_at
Gene name	hypothetical protein LOC100273231
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.16854.1.S1_at	CF674957	hypothetical protein LOC100273231	-	1e-1	At3g18220	phosphatidic acid phosphatase family protein / PAP2 family protein	S.X.	H.G.	Please select
0.83	95.6	Zm.2529.1.A1_s_at	BQ539485	-	-	1e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.76	91.1	Zm.2530.1.A1_at	CF637153	-	-	7e-5	At1g58350	ZW18	S.X.	H.G.	Please select
0.74	90.3	Zm.5352.1.A1_at	BU079827	zinc finger, C3HC4 type family protein /// 3-isopropylmalate dehydrogenase 2	-	3e-53	At5g14200	3-isopropylmalate dehydrogenase, chloroplast, putative	S.X.	H.G.	Please select
0.69	86.5	Zm.9081.1.A1_at	BM340497	-	-	4e-1	At5g51510	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.16877.2.A1_a_at	CK347759	WOX13A protein	-	4e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	S.X.	H.G.	Please select
0.64	81.7	Zm.14028.3.A1_at	BG841009	hypothetical protein LOC100192735	-	8e-6	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	S.X.	H.G.	Please select
0.58	75.1	Zm.12396.1.S1_at	AY106879.1	hypothetical protein LOC100278085	-	5e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.56	74.4	Zm.6475.3.S1_at	AI737301	PHD finger protein	-	3e-18	At2g02470	AL6 (ALFIN-LIKE 6)	S.X.	H.G.	Please select
0.56	74.4	Zm.4048.1.S1_at	AW091504	ras-related protein ARA-4	-	5e-35	At2g43130	ARA4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.5	99.3	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
15.6	99.0	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
13.6	98.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.8	97.9	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
7.1	97.7	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.3	96.9	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.0	95.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	1e-61	236	Zm.8204.1.A1_at	BM073273	hypothetical protein LOC100193193	-	5e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.3715.2.A1_a_at	AY103872.1	hypothetical protein LOC100273717 /// spliceosome RNA helicase BAT1	-	9e-152	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.1379.1.S1_at	AW927828	-	-	5e-4	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.8160.1.A1_at	BM337443	hypothetical protein LOC100274775	-	2e-2	At3g09032	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.1119.1.A1_at	BE510368	-	-	1e-2	At1g78922	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.10072.1.A1_at	BM378946	50S ribosomal protein L1	-	9e-19	At3g63490	ribosomal protein L1 family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.475.1.S1_at	AF174486.1	methylenetetrahydrofolate reductase	-	4e-22	At3g59970	MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.1781.1.A1_at	AW400246	hypothetical protein LOC100279496	-	1e-6	At5g12950	catalytic	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.17769.1.S1_at	CK371603	hypothetical protein LOC100272869	-	2e+0	At1g64510	ribosomal protein S6 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-1	38	Arabidopsis thaliana	At3g18220	821350	phosphatidic acid phosphatase family protein / PAP2 family protein	F:catalytic activity, phosphatidate phosphatase activity;P:biological_process unknown;C:membrane;MFOBPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-7	56	Glycine max	GmaAffx.30344.1.S1_at	AW349341	-	-	5e-6	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	C.G.	S.X.	Please select
0.35	1e-120	432	Hordeum vulgare	Contig8594_at	Contig8594	-	-	2e-17	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please select
0.37	1e-55	218	Oryza sativa	Os08g0359100	AK067740.1	-	Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase)	2e-7	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	7e-23	109	Populus trichocarpa	PtpAffx.21027.1.A1_at	BP931070	hypothetical protein	-	1e-7	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	4e-122	438	Triticum aestivum	Ta.3559.1.S1_at	BE213357	-	-	3e-9	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please select
0.05	5e-5	48	Vitis vinifera	1621834_at	BQ794561	hypothetical protein LOC100254175	-	2e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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