Gene omics information

Query gene ID	Zm.16843.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.16843.1.S1_at	AI978092	-	-	2e-47	At1g50370	serine/threonine protein phosphatase, putative	S.X.	H.G.	Please select
0.77	92.1	Zm.3135.1.S1_at	CD981826	catalytic/ protein phosphatase type 2C	-	2e-13	At1g47380	protein phosphatase 2C-related / PP2C-related	S.X.	H.G.	Please select
0.77	92.1	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	S.X.	H.G.	Please select
0.60	77.8	Zm.13620.1.A1_at	CK369896	-	-	8e-6	At2g37550	AGD7	S.X.	H.G.	Please select
0.42	51.3	Zm.9984.1.A1_at	CO529085	Hypothetical protein LOC100217031	-	4e-4	At1g65000	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.5	96.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.8	95.5	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.7	95.4	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.6	95.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-3	42	Zm.5378.1.A1_at	CA404486	-	-	1e-39	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.6274.1.A1_at	AI691216	-	-	9e-16	At5g27840	TOPP8	C.G.	S.X.	Please select
0.03	3e-1	36	Zm.2912.1.A1_at	CF244896	hypothetical protein LOC100272765	-	1e-82	At1g10430	PP2A-2	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.6971.1.A1_at	AY107357.1	-	-	1e-1	At1g58460	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.1483.1.S1_at	BE050487	-	-	1e+0	At5g13470	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6611.1.A1_at	AW076483	hypothetical protein LOC100192688	-	1e-18	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.5553.1.A1_at	AI622659	-	-	7e-7	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.1458.1.S1_at	BM418233	hypothetical protein LOC100275716	-	1e+0	At5g59610	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.13619.1.A1_at	CF630917	hypothetical protein LOC100192497 /// serine/threonine-protein kinase SAPK2 /// serine/threonine-protein kinase SAPK2	-	1e-30	At4g33950	OST1 (OPEN STOMATA 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	2e-47	190	Arabidopsis thaliana	At1g50370	841459	serine/threonine protein phosphatase, putative	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	9e-32	139	Glycine max	Gma.5883.1.S1_at	CD396478	-	-	7e-115	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.61	0	803	Hordeum vulgare	Contig5442_at	Contig5442	-	-	4e-107	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.62	0	1027	Oryza sativa	Os.18690.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	3e-65	250	Populus trichocarpa	PtpAffx.21417.1.S1_at	CN520322	hypothetical protein	-	3e-135	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	999	Triticum aestivum	Ta.9175.1.S1_at	BJ284678	-	-	4e-95	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.53	1e-67	256	Vitis vinifera	1615735_at	CD797265	hypothetical protein LOC100259271	-	0	At1g50370	serine/threonine protein phosphatase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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