Gene omics information

Query gene ID	Zm.16824.1.S1_at
Gene name	SAM domain family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.16824.1.S1_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.587.1.A1_at	AI715015	-	-	3e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.743.1.S1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.754.1.S1_at	AI745921	-	-	2e-1	At1g33960	AIG1 (AVRRPT2-INDUCED GENE 1)	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.237.1.A1_at	AI670249	-	-	1e+1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	S.X.	H.G.	Please select
0.22	16.9	Zm.18127.1.S1_at	CN845217	membrin 11	-	1e-8	At5g50440	MEMB12 (MEMBRIN 12)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.6	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1974	Zm.16824.1.S1_a_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.40	0	664	Zm.16824.3.S1_at	CF634707	SAM domain family protein	-	3e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.40	0	664	Zm.16824.3.S1_a_at	CF634707	SAM domain family protein	-	3e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.37	3e-167	587	Zm.16824.2.S1_at	BM340171	-	-	1e+0	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.34	6e-79	293	Zm.4523.1.A1_at	AI734577	-	-	2e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.20	3e-65	248	Zm.6335.1.A1_at	AI691439	-	-	3e+0	At1g32583	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17968.1.A1_at	CK827143	-	-	2e+0	At5g02960	40S ribosomal protein S23 (RPS23B)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.4511.1.S1_at	AI734516	hypothetical protein LOC100272620	-	3e-4	At2g18550	HB-2 (HOMEOBOX-2)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.4335.1.S1_at	AY591341.1	hypothetical LOC542170	-	1e-20	At2g18600	RUB1-conjugating enzyme, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-1	36	Arabidopsis thaliana	At3g07170	819904	sterile alpha motif (SAM) domain-containing protein	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;MPOBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-3	44	Glycine max	GmaAffx.81457.1.S1_s_at	BF596737	-	-	3e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.16	1e-37	157	Hordeum vulgare	Contig18943_at	Contig18943	-	-	4e-1	At5g48680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.24	1e-21	105	Oryza sativa	Os04g0465000	AK060688.1	-	Sterile alpha motif SAM domain containing protein	3e+0	At3g48209	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-17	91	Populus trichocarpa	PtpAffx.69954.1.A1_s_at	CV237554	hypothetical protein	-	2e+0	At3g53820	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	5e-32	139	Triticum aestivum	TaAffx.118625.1.S1_s_at	CA692254	-	-	7e-2	At1g64355	unknown protein	C.G.	S.X.	Please select
0.11	7e-10	63	Vitis vinifera	1616120_at	CF210313	hypothetical protein LOC100250700	-	7e-5	At1g70180	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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