CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.16790.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 99.5 Zm.16790.1.S1_at AY110991.1 - - 1e-2 At2g43150 proline-rich extensin-like family protein S.X. H.G.
0.49 61.9 Zm.14993.1.A1_at AY104383.1 NAD-dependent isocitrate dehydrogenase - 1e-47 At4g35260 IDH1 (ISOCITRATE DEHYDROGENASE 1) S.X. H.G.
0.45 56.4 Zm.8152.1.S1_at BM073102 hypothetical protein LOC100192746 - 1e-81 At4g40040 histone H3.2 S.X. H.G.
0.43 52.8 Zm.5024.1.A1_at AI600448 isoamyl acetate-hydrolyzing esterase - 4e+0 At3g27210 unknown protein S.X. H.G.
0.39 45.6 Zm.16958.4.A1_x_at AI737079 hypothetical protein LOC100193269 - 1e-6 At1g48830 40S ribosomal protein S7 (RPS7A) S.X. H.G.
0.38 44.2 Zm.3490.1.A1_at CK371495 arginine/serine-rich splicing factor RSP41 - 2e+0 At2g46610 arginine/serine-rich splicing factor, putative S.X. H.G.
0.36 41.3 Zm.3845.1.A1_at AI711969 hypothetical protein LOC100274222 - 2e-7 At5g38470 DNA repair protein RAD23, putative S.X. H.G.
0.35 38.9 Zm.9389.2.A1_x_at BQ538340 catalytic/ protein phosphatase type 2C - 1e+0 Atmg00980 - S.X. H.G.
0.34 37.2 Zm.4616.2.A1_at CF637845 Hypothetical protein LOC100193318 - 9e-1 At3g25980 mitotic spindle checkpoint protein, putative (MAD2) S.X. H.G.
0.30 29.8 Zm.2384.1.S1_at AY104473.1 hypothetical protein LOC100273133 - 3e-2 At3g18380 sequence-specific DNA binding / transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.0 99.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
40.2 99.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.8 99.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.2 99.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.2 99.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4 99.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM320464 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-9 61 Zm.2378.1.A1_at BQ485596 - - 8e-10 At1g70750 unknown protein C.G. S.X.
0.02 3e-4 46 Zm.6612.1.S1_at AI444726 hypothetical protein LOC100279969 - 2e-1 At1g64380 AP2 domain-containing transcription factor, putative C.G. S.X.
0.01 8e-2 38 Zm.5944.1.A1_at BG874229 pyruvate kinase, cytosolic isozyme - 2e-97 At3g52990 pyruvate kinase, putative C.G. S.X.
0.01 3e-1 36 Zm.5980.1.S1_at AI739740 thioredoxin reductase 2 - 5e-11 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) C.G. S.X.
0.01 3e-1 36 Zm.493.1.A1_at BM333846 LIM transcription factor homolog - 5e-23 At1g10200 WLIM1 C.G. S.X.
0.01 3e-1 36 Zm.13788.1.S1_at AW313252 thioredoxin reductase 2 - 5e-5 At4g35460 NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) C.G. S.X.
0.01 1e+0 34 Zm.5275.1.A1_at CF011385 hypothetical protein LOC100192527 - 5e-9 At1g13640 phosphatidylinositol 3- and 4-kinase family protein C.G. S.X.
0.01 1e+0 34 Zm.456.1.S1_at AF019145.2 maize insect resistance1 - 5e-2 At4g11320 cysteine proteinase, putative C.G. S.X.
0.02 1e+0 34 Zm.4624.1.A1_at AI737393 hypothetical protein LOC100278484 - 2e-1 At5g24879 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-2 42 Arabidopsis thaliana At2g43150 818917 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBFOVA - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.91019.1.S1_at CF806744 - - 7e-11 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig23611_at Contig23611 - - 3e-7 At5g27450 MK (MEVALONATE KINASE) C.G. S.X.
0.05 3e-1 38 Oryza sativa Os10g0415100 AK119782.1 - Amino acid/polyamine transporter II family protein 2e-1 At5g65300 unknown protein C.G. S.X.
0.05 2e-1 38 Populus trichocarpa PtpAffx.224886.1.S1_x_at pmrna43793 hypothetical protein - 2e-6 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.14 3e-6 54 Triticum aestivum TaAffx.87130.2.S1_x_at CA595283 - - 3e-7 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1619655_at CF604767 hypothetical protein LOC100252634 - 4e-1 At3g09480 histone H2B, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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