Gene omics information

Query gene ID	Zm.16622.1.A1_at
Gene name	hypothetical protein LOC100217012
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.16622.1.A1_at	CK144420	hypothetical protein LOC100217012	-	1e+0	At5g11630	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.6103.1.A1_at	CA403951	UBA and UBX domain-containing protein	-	2e-4	At4g04210	PUX4	S.X.	H.G.	Please select
0.33	36.0	Zm.6088.1.A1_at	BM338924	mitochondrial glycoprotein	-	1e-2	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	S.X.	H.G.	Please select
0.23	18.6	Zm.500.1.A1_at	AF254072.1	Histone deacetylase 2 isoform b	-	5e-5	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	S.X.	H.G.	Please select
0.05	1.9	Zm.17028.1.S1_at	CF972440	-	-	3e-1	At1g70540	EDA24 (embryo sac development arrest 24)	S.X.	H.G.	Please select
0.04	1.5	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.5	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	5e-4	44	Zm.9790.1.A1_at	CO523101	hypothetical protein LOC100192495	-	1e+0	At2g41225	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.8052.1.S1_at	CK827803	-	-	2e-2	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.2752.1.A1_at	CA404590	hypothetical protein LOC100274105	-	1e+0	At5g09980	PROPEP4 (Elicitor peptide 4 precursor)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.18689.1.A1_at	CO522176	hypothetical protein LOC100191765 /// hypothetical protein LOC100217172	-	9e+0	At2g18380	transcription factor	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.15915.1.S1_at	AI964614	-	-	3e-7	At2g45770	CPFTSY	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7914.1.A1_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7914.1.A1_a_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5352.1.A1_a_at	BU079827	zinc finger, C3HC4 type family protein /// 3-isopropylmalate dehydrogenase 2 /// 3-isopropylmalate dehydrogenase 2	-	3e-53	At5g14200	3-isopropylmalate dehydrogenase, chloroplast, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5352.1.A1_at	BU079827	zinc finger, C3HC4 type family protein /// 3-isopropylmalate dehydrogenase 2	-	3e-53	At5g14200	3-isopropylmalate dehydrogenase, chloroplast, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g11630	831035	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psMA018xH13f_at	PsAffx.psMA018xH13f	-	-	3e+0	At4g09590	NHL22	C.G.	S.X.	Please select
0.10	7e-13	73	Hordeum vulgare	HVSMEg0015B10r2_at	HVSMEg0015B10r2	-	-	3e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.05	6e-4	46	Oryza sativa	Os06g0672400	AK068794.1	-	Ribulose bisphosphate carboxylase, large chainfamily protein	1e-8	At1g07090	LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.80120.1.S1_at	BU824863	-	-	1e+1	At5g51700	PBS2 (PPHB SUSCEPTIBLE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e-9	63	Triticum aestivum	TaAffx.43147.1.A1_at	CA721949	-	-	4e+0	At3g59330	anthocyanin-related membrane protein family	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1610309_at	CB977672	hypothetical protein LOC100255432	-	3e-4	At5g28300	trihelix DNA-binding protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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