Gene omics information

Query gene ID	Zm.16530.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.16530.1.A1_at	BM953023	-	-	3e-51	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.16527.1.A1_at	CF637778	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	S.X.	H.G.	Please select
0.60	77.8	Zm.14705.1.S1_at	CA405205	leucoanthocyanidin dioxygenase	-	2e+0	At1g35320	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.14702.1.A1_at	CF628124	Ribosomal protein S11	-	1e+0	At5g46730	glycine-rich protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5824.1.A1_at	AI649789	-	-	2e+0	At5g10680	calmodulin-binding protein-related	S.X.	H.G.	Please select
0.39	45.6	Zm.3926.1.A1_at	BU050394	hypothetical protein LOC100278398	-	2e+0	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.5	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2	94.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.1	94.3	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.1	94.3	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.1	94.3	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.0	94.0	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0	94.0	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0	94.0	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	8e-133	472	Zm.16530.3.S1_at	CF634413	-	-	1e-72	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.44	8e-133	472	Zm.16530.3.S1_x_at	CF634413	-	-	1e-72	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.45	8e-130	462	Zm.16530.2.S1_a_at	BM953031	-	-	1e-69	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.45	8e-130	462	Zm.16530.2.S1_x_at	BM953031	-	-	1e-69	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.49	7e-78	289	Zm.17322.1.A1_at	CK370219	-	-	3e-84	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.25	3e-52	204	Zm.2925.3.A1_at	CF002413	Ubiquitin	-	4e-41	At2g47110	UBQ6	C.G.	S.X.	Please select
0.21	2e-50	198	Zm.15971.1.S1_at	CF638101	40S ribosomal protein S27a	-	1e-44	At2g47110	UBQ6	C.G.	S.X.	Please select
0.14	3e-46	184	Zm.7727.1.S1_s_at	CK986121	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	5e-129	At5g20620	UBQ4	C.G.	S.X.	Please select
0.25	1e-45	182	Zm.2925.2.S1_at	BG836389	-	-	4e-63	At2g47110	UBQ6	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	3e-51	202	Arabidopsis thaliana	At3g52590	824425	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	Ubiquitin extension protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.50	9e-80	297	Glycine max	Gma.11169.1.S1_x_at	BI702093	-	-	8e-85	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.50	6e-128	456	Hordeum vulgare	Contig1108_s_at	Contig1108	-	-	1e-71	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.49	4e-144	511	Oryza sativa	Os09g0568400	AK060445.1	-	60S ribosomal protein L40 (CEP52)	2e-52	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	9e-46	184	Populus trichocarpa	Ptp.4459.1.S1_x_at	CV230058	hypothetical protein	-	4e-63	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	1e-127	456	Triticum aestivum	Ta.27377.2.S1_at	BJ320612	-	-	2e-64	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.27	2e-31	135	Vitis vinifera	1620385_s_at	CF372803	similar to ubiquitin fusion protein	-	3e-78	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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