Gene omics information

Query gene ID	Zm.16513.4.S1_at
Gene name	actin-7
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.16513.4.S1_at	AY104628.1	actin-7	-	0	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.83	95.6	Zm.6381.1.A1_at	CO534945	hypothetical protein LOC100273528	-	2e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	S.X.	H.G.	Please select
0.73	89.9	Zm.1783.1.S1_at	AY109631.1	protein binding protein	-	1e+1	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.4336.1.S1_at	CA403908	hypothetical protein LOC100274309	-	4e+0	At5g38580	-	S.X.	H.G.	Please select
0.67	85.8	Zm.6874.2.S1_at	CF637577	-	-	3e-3	At2g45430	DNA-binding protein-related	S.X.	H.G.	Please select
0.61	79.5	Zm.6872.1.A1_at	AI065521	-	-	2e+0	At1g27920	MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)	S.X.	H.G.	Please select
0.31	31.6	Zm.4476.1.S1_at	CN844697	hypothetical protein LOC100279771	-	4e+0	At3g20590	non-race specific disease resistance protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	97.5	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.2	97.4	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.2	97.4	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.2	94.5	GSM202281	Mo17 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
2.9	93.8	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM202284	B73xMo17 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
2.6	92.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.5	92.6	GSM202283	Mo17xB73 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	1822	Zm.16513.5.S1_at	AW289163	-	-	0	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.60	0	894	Zm.16513.9.A1_a_at	CD444572	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.52	0	833	Zm.16513.1.A1_at	CF634462	hypothetical protein LOC100273404	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.55	0	815	Zm.16513.2.A1_at	AY103587.1	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.58	0	777	Zm.6944.2.S1_a_at	CF008486	-	-	2e-158	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.58	0	775	Zm.16513.6.A1_at	AI834422	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.52	0	739	Zm.6944.1.S1_a_at	BG842899	actin-1	-	8e-171	At3g53750	ACT3 (actin 3)	C.G.	S.X.	Please select
0.52	0	739	Zm.6944.1.S1_x_at	BG842899	actin-1	-	8e-171	At3g53750	ACT3 (actin 3)	C.G.	S.X.	Please select
0.55	0	700	Zm.16513.7.A1_at	CA405325	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	801	Arabidopsis thaliana	At5g09810	830841	ACT7 (ACTIN 7)	Member of Actin gene family.Mutants are defective in germination and root growth.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.56	9e-159	561	Glycine max	Gma.6406.1.S1_at	CD394756	-	-	0	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.63	0	1269	Hordeum vulgare	Contig1394_at	Contig1394	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.63	0	1465	Oryza sativa	Os11g0163100	AK071450.1	-	Actin 7 (Actin 2)	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.53	0	821	Populus trichocarpa	PtpAffx.1258.4.S1_s_at	CF232778	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	0	1201	Triticum aestivum	Ta.28253.1.S1_at	BJ250223	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.50	0	793	Vitis vinifera	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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