CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.16508.3.A1_x_at

Gene name ribosomal protein L39

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.16508.3.A1_x_at AI739900 ribosomal protein L39 - 4e-9 At3g02190 60S ribosomal protein L39 (RPL39B) S.X. H.G.
0.56 74.4 Zm.7021.1.S1_at CD440551 mitochondrial import inner membrane translocase subunit Tim8 - 3e-4 At5g50810 TIM8 S.X. H.G.
0.53 69.1 Zm.6093.2.S1_at CD440434 translocon-associated protein beta containing protein - 6e-1 At5g14030 translocon-associated protein beta (TRAPB) family protein S.X. H.G.
0.50 65.7 Zm.3168.1.A1_x_at AW331178 - - 5e-2 At3g51960 bZIP family transcription factor S.X. H.G.
0.50 65.7 Zm.19234.1.A1_at AI622555 hypothetical protein LOC100191668 - 3e-1 At1g63120 ATRBL2 (Arabidopsis thaliana Rhomboid-like 2) S.X. H.G.
0.50 65.7 Zm.10826.1.S1_at BQ619411 hypothetical protein LOC100274249 - 8e-9 At2g41190 amino acid transporter family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 96.7 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.3 96.1 GSM205366 B73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.2 96.0 GSM205427 Mo17xB73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.1 95.9 GSM205372 B73xMo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.1 95.9 GSM205374 B73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.1 95.9 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.0 95.8 GSM205370 B73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9 95.7 GSM205368 B73xMo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9 95.7 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9 95.7 GSM205375 Mo17xB73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.89 2e-117 420 Zm.16508.3.A1_at AI739900 ribosomal protein L39 - 4e-9 At3g02190 60S ribosomal protein L39 (RPL39B) C.G. S.X.
0.50 3e-79 293 Zm.16508.4.S1_at CF017029 60S ribosomal protein L39 - 4e-12 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.27 1e-69 262 Zm.16508.2.A1_at CF018449 60S ribosomal protein L39 /// ribosomal protein L39 - 1e-15 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.25 2e-67 254 Zm.16508.1.S1_at BE510313 ribosomal protein L39 - 4e-13 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.25 2e-67 254 Zm.16508.1.S1_x_at BE510313 ribosomal protein L39 - 4e-13 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.03 4e-1 34 Zm.10013.1.A1_at CF629073 chemocyanin - 6e+0 At5g26890 unknown protein C.G. S.X.
0.02 2e+0 32 Zm.2707.1.S1_at BG842199 - - 2e-1 At5g05340 peroxidase, putative C.G. S.X.
0.01 2e+0 32 Zm.15903.3.A1_at AY104679.1 hypothetical protein LOC100273579 - 4e-12 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.02 7e+0 30 Zm.9850.1.A1_at BM332622 - - 2e+0 At1g20880 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 4e-9 61 Arabidopsis thaliana At3g02190 820350 60S ribosomal protein L39 (RPL39B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP - - - C.G. S.X.
0.30 6e-37 155 Glycine max GmaAffx.92832.1.S1_at CF806905 - - 1e-20 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.29 8e-43 173 Hordeum vulgare HV14D03r_at HV14D03r - - 1e-12 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.31 2e-59 230 Oryza sativa Os.46185.1.S1_x_at - - - 0 C.G. S.X.
0.24 2e-30 133 Populus trichocarpa Ptp.5886.1.A1_at CA824863 hypothetical protein - 1e-24 At3g02190 60S ribosomal protein L39 (RPL39B) C.G. S.X.
0.60 1e-80 299 Triticum aestivum Ta.15810.1.S1_at CA487117 Ribosomal protein L39 - 4e-18 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.28 1e-31 135 Vitis vinifera 1615567_at CF204127.1 - - 2e-10 At3g02190 60S ribosomal protein L39 (RPL39B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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