Gene omics information

Query gene ID	Zm.16508.1.S1_x_at
Gene name	ribosomal protein L39
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.16508.1.S1_x_at	BE510313	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	S.X.	H.G.	Please select
0.91	99.0	Zm.10261.1.A1_at	BM501576	-	-	4e-20	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	S.X.	H.G.	Please select
0.77	92.1	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.71	88.2	Zm.9526.1.A1_at	AY110244.1	long-chain-fatty-acid-CoA ligase-like protein	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	S.X.	H.G.	Please select
0.53	69.1	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	S.X.	H.G.	Please select
0.46	58.4	Zm.11827.1.A1_at	BM381077	hypothetical protein LOC100192043	-	4e+0	At3g55820	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	94.7	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3	94.7	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.78	0	789	Zm.16508.1.S1_at	BE510313	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	C.G.	S.X.	Please select
0.33	2e-87	321	Zm.16508.2.A1_at	CF018449	60S ribosomal protein L39 /// ribosomal protein L39	-	1e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	C.G.	S.X.	Please select
0.28	6e-75	280	Zm.16508.4.S1_at	CF017029	60S ribosomal protein L39	-	4e-12	At4g31985	60S ribosomal protein L39 (RPL39C)	C.G.	S.X.	Please select
0.28	3e-67	254	Zm.16508.3.A1_at	AI739900	ribosomal protein L39	-	4e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please select
0.28	3e-67	254	Zm.16508.3.A1_x_at	AI739900	ribosomal protein L39	-	4e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.15615.1.S1_at	CO533411	plant-specific domain TIGR01627 family protein	-	1e+1	At5g15840	CO (CONSTANS)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.18281.1.S1_at	BG840860	hypothetical protein LOC100277869	-	5e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	4e-2	38	Zm.14048.1.A1_at	CD446343	hypothetical protein LOC100191672	-	5e-30	At3g02630	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.12770.1.S1_at	CA398540	translation initiation factor eIF-2B alpha subunit	-	1e-5	At1g72340	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	4e-13	75	Arabidopsis thaliana	At4g31985	829329	60S ribosomal protein L39 (RPL39C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	7e-37	155	Glycine max	GmaAffx.92832.1.S1_at	CF806905	-	-	1e-20	At4g31985	60S ribosomal protein L39 (RPL39C)	C.G.	S.X.	Please select
0.29	2e-38	159	Hordeum vulgare	HV14D03r_at	HV14D03r	-	-	1e-12	At4g31985	60S ribosomal protein L39 (RPL39C)	C.G.	S.X.	Please select
0.32	6e-66	252	Oryza sativa	Os02g0797200	AK120800.1	-	60S ribosomal protein L39	6e-11	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	5e-47	188	Populus trichocarpa	Ptp.4132.1.S1_at	CA825177	hypothetical protein	-	4e-22	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	2e-85	315	Triticum aestivum	Ta.24641.2.S1_at	CA620303	Ribosomal protein L39	-	9e-16	At4g31985	60S ribosomal protein L39 (RPL39C)	C.G.	S.X.	Please select
0.24	6e-31	133	Vitis vinifera	1615567_at	CF204127.1	-	-	2e-10	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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