Gene omics information

Query gene ID	Zm.16488.1.A1_at
Gene name	hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.16488.1.A1_at	CD440410	hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4	-	7e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4916.1.A1_at	AY111126.1	-	-	2e-1	At4g19340	-	S.X.	H.G.	Please select
0.50	65.7	Zm.1025.1.A1_at	CO530127	GAST1 protein	-	2e-2	At3g10185	-	S.X.	H.G.	Please select
0.40	48.5	Zm.3111.1.A1_at	AY107180.1	hypothetical protein LOC100191479	-	5e-51	At5g25100	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.5524.1.S1_at	AY104178.1	hypothetical protein LOC100277069	-	4e-3	At4g23800	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.30	29.8	Zm.6812.1.A1_s_at	AI396472	-	-	5e+0	At4g30880	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	97.9	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
6.3	97.4	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.6	97.1	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.4	97.0	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.0	95.8	GSM258181	B37 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
3.9	95.7	GSM258201	Wf9 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
3.7	95.4	GSM258172	B37 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
3.7	95.4	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
3.4	94.9	GSM258175	Mo17 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
3.2	94.5	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-8	59	Zm.714.1.A1_at	U66105.1	phospholipid transfer protein	-	6e+0	At3g48490	unknown protein	C.G.	S.X.	Please select
0.06	1e-8	59	Zm.19.2.S1_x_at	AW574476	phospholipid transfer protein homolog1	-	7e+0	At5g08415	lipoic acid synthase family protein	C.G.	S.X.	Please select
0.06	5e-8	57	Zm.2085.1.S1_s_at	J04176.1	phospholipid transfer protein homolog1	-	7e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please select
0.06	5e-8	57	Zm.19.1.S1_at	M57249.1	phospholipid transfer protein homolog1	-	5e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please select
0.04	5e-8	57	Zm.19.1.A1_a_at	M57249.1	Phospholipid transfer protein homolog1	-	5e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please select
0.14	2e-7	56	Zm.4168.1.A1_at	BM337240	hypothetical protein LOC100274469	-	7e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e-7	56	Zm.14039.1.A2_a_at	CF003126	plasminogen activator inhibitor 1 RNA-binding protein	-	4e-3	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.02	2e-7	56	Zm.14039.1.A1_a_at	BM340531	plasminogen activator inhibitor 1 RNA-binding protein	-	4e-3	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.02	2e-7	56	Zm.14039.1.A1_at	BM340531	plasminogen activator inhibitor 1 RNA-binding protein	-	4e-3	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e+0	32	Arabidopsis thaliana	At5g52160	835292	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	HgAffx.23738.1.S1_at	BF014111	-	-	6e-2	At5g44495	-	C.G.	S.X.	Please select
0.20	4e-6	52	Hordeum vulgare	Contig2043_s_at	Contig2043	-	-	1e+0	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please select
0.15	4e-15	83	Oryza sativa	Os11g0115100	AK119692.1	-	Lipid transfer protein	2e+0	At4g15460	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.219322.1.S1_at	pmrna35207	hypothetical protein	-	2e+1	At5g43640	40S ribosomal protein S15 (RPS15E)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	2e-126	452	Triticum aestivum	TaAffx.8849.1.S1_at	CA619245	-	-	4e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Vitis vinifera	1619855_at	CB920107	-	-	1e-1	At2g44745	WRKY family transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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