CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.16482.2.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.16482.2.A1_at BM337760 - - 9e-19 At3g09630 60S ribosomal protein L4/L1 (RPL4A) S.X. H.G.
0.77 92.1 Zm.5917.1.A1_a_at BM337345 hypothetical protein LOC100192679 - 2e+0 At1g27970 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) S.X. H.G.
0.67 85.8 Zm.5220.1.S1_at AI614989 hypothetical protein LOC100279470 - 1e+0 At5g36120 CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) S.X. H.G.
0.67 85.8 Zm.5441.1.S1_at CO528962 hypothetical protein LOC100274317 - 3e+0 At3g23130 SUP (SUPERMAN) S.X. H.G.
0.55 71.6 Zm.15852.2.S1_a_at AY108720.1 - - 1e-41 At5g03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein S.X. H.G.
0.50 65.7 ZmAffx.1097.1.S1_at AW120085 - - 1e+1 At5g25770 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 94.7 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.3 94.7 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2 94.5 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9 93.8 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.9 93.8 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8 93.5 GSM205375 Mo17xB73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.7 93.2 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.6 92.9 GSM205372 B73xMo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.6 92.9 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.6 92.9 GSM205427 Mo17xB73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.73 0 1735 Zm.16482.3.A1_x_at CA403984 60S ribosomal protein L4 - 6e-20 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
0.75 0 1735 Zm.16482.3.A1_at CA403984 60S ribosomal protein L4 - 6e-20 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
0.44 5e-139 494 Zm.1724.1.S1_at BE512255 hypothetical protein LOC100191314 - 2e-12 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
0.02 2e-2 40 ZmAffx.834.1.A1_at AI770566 - - 8e-1 At1g54420 unknown protein C.G. S.X.
0.02 2e-2 40 ZmAffx.834.1.S1_at AI770566 hypothetical protein LOC100277584 - 8e-1 At1g54420 unknown protein C.G. S.X.
0.02 2e-2 40 ZmAffx.1069.1.A1_at AI941949 RING-H2 finger protein ATL2K - 6e+0 At5g12380 annexin, putative C.G. S.X.
0.02 2e-2 40 ZmAffx.1069.1.S1_at AI941949 - - 6e+0 At5g12380 annexin, putative C.G. S.X.
0.01 2e-2 40 Zm.3537.1.A1_at CF062995 - - 2e-1 At1g52180 major intrinsic family protein / MIP family protein C.G. S.X.
0.01 8e-2 38 Zm.1777.1.A1_at AY110696.1 hypothetical protein LOC100279457 - 3e-4 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 9e-19 95 Arabidopsis thaliana At3g09630 820120 60S ribosomal protein L4/L1 (RPL4A) F:structural constituent of ribosome;P:translation;C:in 9 components;MOAFPB - - - C.G. S.X.
0.23 3e-35 151 Glycine max PsAffx.CL78Contig1_at PsAffx.CL78Contig1 - - 3e+0 At4g34265 unknown protein C.G. S.X.
0.62 0 702 Hordeum vulgare Contig2268_s_at Contig2268 - - 2e-17 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
0.67 0 1277 Oryza sativa Os07g0180900 AK060711.1 - Ribosomal protein L4/L1e family protein 2e-4 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
0.14 2e-14 81 Populus trichocarpa PtpAffx.288.1.A1_s_at CV254117 hypothetical protein - 1e-41 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
0.62 0 658 Triticum aestivum Ta.21954.1.S1_at BJ284045 - - 2e-10 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
0.15 3e-28 125 Vitis vinifera 1620795_at CF214162 hypothetical protein LOC100255110 - 4e-40 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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