Gene omics information

Query gene ID	Zm.16394.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.16394.1.S1_at	CF272871	-	-	1e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	S.X.	H.G.	Please select
0.80	94.0	Zm.5851.6.A1_a_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.61	79.5	Zm.17374.2.A1_a_at	CF637833	-	-	1e+0	At3g43490	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.5908.1.A1_at	AW424447	hypothetical protein LOC100273971	-	2e-2	At1g11890	SEC22	S.X.	H.G.	Please select
0.40	48.5	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	S.X.	H.G.	Please select
0.26	22.7	Zm.5796.2.S1_at	AY107655.1	-	-	3e-18	At5g66420	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	3e-19	95	ZmAffx.697.1.A1_at	AI737808	-	-	3e+0	At4g27745	-	C.G.	S.X.	Please select
0.23	3e-19	95	ZmAffx.697.1.S1_at	AI737808	-	-	3e+0	At4g27745	-	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.5646.1.A1_a_at	BM347849	hypothetical protein LOC100191650	-	2e-25	At1g04760	ATVAMP726	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.5646.2.A1_x_at	AW257823	hypothetical protein LOC100191650	-	3e-41	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.13318.1.S1_at	CA828001	eukaryotic peptide chain release factor subunit 1-1	-	9e-96	At1g12920	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.575.1.A1_at	AI714774	-	-	1e-2	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6451.2.S1_a_at	AI770434	-	-	2e-4	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6451.2.A1_at	AI770434	-	-	1e-2	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6451.1.S1_at	AY107195.1	-	-	2e-11	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	Arabidopsis thaliana	At2g03470	814876	myb family transcription factor / ELM2 domain-containing protein	F:DNA binding;P:unknown;C:nucleus;OMFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	38	Glycine max	GmaAffx.74758.1.S1_at	BI316983	MYB transcription factor MYB150	-	8e+0	At5g50330	ATP binding / protein kinase	C.G.	S.X.	Please select
0.06	1e-3	44	Hordeum vulgare	Contig24769_at	Contig24769	-	-	4e+0	At4g10767	SCRL21 (SCR-Like 21)	C.G.	S.X.	Please select
0.04	1e-3	46	Oryza sativa	Os03g0425800	AK100427.1	-	MYBY2 protein (Fragment)	3e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e-2	40	Populus trichocarpa	PtpAffx.209126.1.S1_at	pmrna18056	hypothetical protein	-	7e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-19	97	Triticum aestivum	Ta.6368.1.A1_at	CD910839	-	-	4e-2	At2g03470	myb family transcription factor / ELM2 domain-containing protein	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1617721_at	CF568847	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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