Gene omics information

Query gene ID	Zm.16354.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.16354.1.S1_at	CF019372	-	-	1e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.4253.1.A1_at	BM266771	hypothetical protein LOC100277148	-	4e-2	At5g64240	AtMC3 (metacaspase 3)	S.X.	H.G.	Please select
0.60	77.8	Zm.4254.1.S1_at	AI795722	protein binding protein	-	1e-8	At2g02960	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.11617.1.A1_at	BM379349	-	-	1e+0	At5g03150	JKD (JACKDAW)	S.X.	H.G.	Please select
0.36	41.3	Zm.10787.1.A1_at	CF625193	hypothetical protein LOC100274116	-	2e-13	At3g55000	TON1A (TONNEAU 1)	S.X.	H.G.	Please select
0.27	24.6	Zm.13735.1.S1_at	AY106209.1	hypothetical protein LOC100273905	-	6e-5	At3g07630	ADT2 (arogenate dehydratase 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.3	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.4	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.9	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
18.8	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	38	Zm.9277.1.S1_at	AY105731.1	hypothetical protein LOC100193622	-	1e-1	At2g25820	transcription factor	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.4041.1.S1_a_at	AY313904.1	yabby10 protein	-	9e-10	At4g00180	YAB3 (YABBY3)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8094.1.A1_at	BM266491	-	-	2e+0	At3g50720	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4905.1.S1_at	AY106392.1	hypothetical protein LOC100272547	-	1e-14	At4g27120	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4513.1.A1_at	CA405232	-	-	3e+0	At2g41280	M10	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3699.5.S1_a_at	AY107222.1	-	-	3e-2	At5g09995	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3699.5.A1_at	AY107222.1	-	-	3e-2	At5g09995	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3026.1.A1_at	CF030452	NADPH HC toxin reductase-like protein	-	3e+0	At1g32690	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2784.1.A1_at	CF629950	hypothetical protein LOC100276915	-	5e-8	At5g17420	IRX3 (IRREGULAR XYLEM 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g30660	829189	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.C47000018_at	PsAffx.C47000018	-	-	1e+0	At5g07510	GRP14	C.G.	S.X.	Please select
0.03	4e-2	38	Hordeum vulgare	Contig13586_at	Contig13586	-	-	1e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select
0.02	6e-1	36	Oryza sativa	Os.11264.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.145636.1.S1_at	CX659471	hypothetical protein	-	2e-2	At3g54200	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	Ta.5524.1.S1_at	BJ276725	-	-	4e+0	At3g55790	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1620915_at	CF511488	-	-	2e-1	At2g17740	DC1 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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