CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.16350.1.S1_at

Gene name hypothetical protein LOC100273959

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.16350.1.S1_at CF349260 hypothetical protein LOC100273959 - 6e-31 At2g20930 - S.X. H.G.
0.67 85.8 Zm.2653.1.A1_at BM073552 - - 7e+0 At4g37409 unknown protein S.X. H.G.
0.60 77.8 Zm.2648.1.A1_at AY104745.1 hypothetical protein LOC100216957 - 3e-3 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) S.X. H.G.
0.59 76.1 Zm.2652.1.A1_at AW066710 - - 1e+1 At5g18020 auxin-responsive protein, putative S.X. H.G.
0.50 65.7 Zm.3866.1.S1_at CK370021 D-amino acid oxidase - 3e+0 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) S.X. H.G.
0.36 41.3 Zm.11837.1.A1_at BM381140 hypothetical protein LOC100275424 - 1e+0 At4g16380 metal ion binding S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.5 95.1 GSM206317 Right pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM206291 Upper pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM206292 Upper pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0 94.0 GSM206319 Lower pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206328 Upper pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206329 Right pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 36 Zm.4560.1.S1_at AI734791 Pti1-like kinase-like - 3e-47 At3g59350 serine/threonine protein kinase, putative C.G. S.X.
0.03 2e-1 36 Zm.17916.1.S1_at CF633017 hypothetical protein LOC100193759 - 4e-1 At3g03776 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 7e-1 34 Zm.3299.1.S1_at AY105026.1 - - 2e-1 At3g43150 unknown protein C.G. S.X.
0.03 3e+0 32 Zm.6423.2.A1_at AI691968 hypothetical protein LOC100273356 - 1e+0 At3g23180 - C.G. S.X.
0.01 3e+0 32 Zm.3254.2.S1_at CA403402 - - 7e-11 At1g18450 ATARP4 C.G. S.X.
0.01 3e+0 32 Zm.3136.1.A1_at CF625170 hypothetical protein LOC100192461 - 9e-66 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.02 3e+0 32 Zm.17827.1.A1_at CK369891 retinoid-inducible serine carboxypeptidase - 2e+0 At2g12940 UNE4 (unfertilized embryo sac 4) C.G. S.X.
0.01 3e+0 32 Zm.16643.1.S1_at CK144844 peroxidase 27 - 3e-3 At1g44970 peroxidase, putative C.G. S.X.
0.02 3e+0 32 Zm.15759.1.A1_at AW129802 hypothetical protein LOC100277415 - 8e-6 At5g47900 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 6e-31 135 Arabidopsis thaliana At2g20930 816627 - F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP - - - C.G. S.X.
0.36 2e-65 250 Glycine max Gma.16382.1.S1_at AW317554 - - 2e-61 At2g20930 - C.G. S.X.
0.53 8e-158 555 Hordeum vulgare Contig10647_at Contig10647 - - 2e-46 At2g20930 - C.G. S.X.
0.52 4e-160 565 Oryza sativa Os09g0541500 AK060244.1 - Longin-like domain containing protein 3e-29 At2g20930 - C.G. S.X.
0.38 3e-33 143 Populus trichocarpa PtpAffx.5486.1.S1_at CV256117 hypothetical protein - 1e-32 At2g20930 - C.G. S.X.
0.49 1e-149 529 Triticum aestivum Ta.21086.1.S1_a_at CD864763 - - 4e-38 At2g20930 - C.G. S.X.
0.37 7e-40 163 Vitis vinifera 1612301_at CF202950.1 hypothetical protein LOC100241847 - 4e-35 At2g20930 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage