Gene omics information

Query gene ID	Zm.16342.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.16342.1.S1_at	CO526291	-	-	5e-7	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.9012.1.A1_at	CA403655	-	-	2e+0	At5g63090	LOB (LATERAL ORGAN BOUNDARIES)	S.X.	H.G.	Please select
0.33	36.0	Zm.187.1.S1_at	CK370048	anionic peroxidase	-	1e-5	At5g40150	peroxidase, putative	S.X.	H.G.	Please select
0.29	28.1	Zm.18299.1.A1_at	CF626048	hypothetical protein LOC100275680	-	2e+0	At5g37415	sequence-specific DNA binding / transcription factor	S.X.	H.G.	Please select
0.14	7.7	Zm.15077.1.A1_a_at	CF057940	-	-	2e+0	At5g08315	-	S.X.	H.G.	Please select
0.05	1.9	Zm.611.1.A1_at	AF326499.1	small basic membrane intrinsic protein2a	-	6e-1	At2g15740	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
7.8	97.9	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.7	97.9	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.7	97.9	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.5	97.8	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.4	97.5	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.3	97.4	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.2	97.4	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.0	97.3	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.9	97.3	GSM205368	B73xMo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	1215	Zm.16342.1.S1_a_at	CO526291	snRNP core Sm protein Sm-X5-like protein	-	5e-7	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	C.G.	S.X.	Please select
0.39	2e-161	567	Zm.6833.1.S1_at	AY108937.1	hypothetical protein LOC100276999	-	2e-18	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.733.1.S1_at	AY108731.1	SINA2	-	2e-7	At2g41980	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.3941.1.S1_at	BM337116	-	-	2e-32	At1g11890	SEC22	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.1495.1.A1_at	AY109698.1	Asr protein	-	3e-1	At4g04930	DES-1-LIKE	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.10591.1.S1_at	BQ479053	hypothetical protein LOC100194290	-	3e-22	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8866.1.A1_at	BM348347	expansin-like 3	-	1e-2	At4g38400	ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8547.1.A1_at	BM338859	-	-	5e+0	At3g09380	-	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.7011.1.S1_s_at	CA398268	hypothetical protein LOC100191203	-	3e-19	At4g21110	G10 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	5e-7	56	Arabidopsis thaliana	At1g03330	839526	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	7e-7	56	Glycine max	Gma.2161.1.S1_a_at	CD404355	-	-	3e-20	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	C.G.	S.X.	Please select
0.31	2e-75	282	Hordeum vulgare	Contig9416_at	Contig9416	-	-	1e-19	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	C.G.	S.X.	Please select
0.29	6e-85	315	Oryza sativa	Os08g0154700	CF324539	-	Small nuclear ribonucleoprotein (Sm protein)family protein	9e-24	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	3e-21	103	Populus trichocarpa	Ptp.4944.1.S1_s_at	BU880652	hypothetical protein	-	1e-40	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	5e-158	557	Triticum aestivum	TaAffx.113221.1.S1_at	CA617162	-	-	1e-18	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	C.G.	S.X.	Please select
0.12	4e-5	48	Vitis vinifera	1620432_s_at	CB974173	hypothetical protein LOC100249484	-	5e-40	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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