Gene omics information

Query gene ID	Zm.16305.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.54	69.8	Zm.16305.1.A1_at	CA398833	-	-	9e-15	At3g15640	cytochrome c oxidase family protein	S.X.	H.G.	Please select
0.75	90.8	Zm.16854.1.S1_at	CF674957	hypothetical protein LOC100273231	-	1e-1	At3g18220	phosphatidic acid phosphatase family protein / PAP2 family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.2529.1.A1_s_at	BQ539485	-	-	1e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.54	69.8	Zm.300.1.A1_at	AY107888.1	polyamine oxidase1	-	1e+1	At5g15600	SP1L4 (SPIRAL1-LIKE4)	S.X.	H.G.	Please select
0.54	69.8	Zm.253.1.A1_at	CF020390	hypothetical protein LOC100279053	-	5e+0	At5g29807	unknown protein	S.X.	H.G.	Please select
0.52	67.3	Zm.14028.3.A1_at	BG841009	hypothetical protein LOC100192735	-	8e-6	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	S.X.	H.G.	Please select
0.52	67.3	Zm.8709.1.A1_at	CF624906	-	-	6e-6	At1g01650	aspartic-type endopeptidase/ peptidase	S.X.	H.G.	Please select
0.48	61.3	Zm.5352.1.A1_at	BU079827	zinc finger, C3HC4 type family protein /// 3-isopropylmalate dehydrogenase 2	-	3e-53	At5g14200	3-isopropylmalate dehydrogenase, chloroplast, putative	S.X.	H.G.	Please select
0.47	59.9	Zm.2530.1.A1_at	CF637153	-	-	7e-5	At1g58350	ZW18	S.X.	H.G.	Please select
0.45	56.4	Zm.14695.1.S1_at	CB334472	hypothetical protein LOC100217075	-	3e+0	At1g09390	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.6	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.4	94.9	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	1039	Zm.6351.1.S1_at	AY105055.1	hypothetical protein LOC100277708	-	5e-1	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.15932.1.A1_at	AJ577238.1	beta3-glucuronyltransferase	-	8e-1	At5g28610	-	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.10180.1.S1_at	BU645403	hypothetical protein LOC100191597	-	4e-1	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.9638.1.S1_at	BM332555	-	-	4e-1	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.5299.1.S1_at	AY188755.1	Atypical receptor-like kinase MARK	-	3e-4	At1g48480	RKL1	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.14365.1.A1_at	CO534509	5S rRNA binding protein	-	2e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.12007.1.A1_at	BM382593	-	-	2e+0	At4g28500	ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.11748.1.A1_at	BM380426	hypothetical protein LOC100276902	-	1e+0	At4g17310	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	ZmAffx.1177.1.S1_at	AW927462	-	-	7e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	9e-15	81	Arabidopsis thaliana	At3g15640	820806	cytochrome c oxidase family protein	F:cytochrome-c oxidase activity, metal ion binding;P:unknown;C:mitochondrial envelope, mitochondrion, chloroplast thylakoid membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	PsAffx.C2000142_at	PsAffx.C2000142	-	-	4e-2	At4g01280	myb family transcription factor	C.G.	S.X.	Please select
0.55	3e-102	371	Hordeum vulgare	Contig5256_at	Contig5256	-	-	3e-11	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.58	2e-131	470	Oryza sativa	Os01g0612200	AK071340.1	-	Cytochrome c oxidase subunit Vb	4e-17	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	7e-10	65	Populus trichocarpa	Ptp.287.1.A1_s_at	AJ774516	hypothetical protein	-	1e-38	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	2e-93	343	Triticum aestivum	Ta.815.1.S1_s_at	CK195825	-	-	9e-3	At1g52710	cytochrome c oxidase-related	C.G.	S.X.	Please select
0.04	9e-6	50	Vitis vinifera	1619754_at	BQ800202	similar to cytochrome c oxidase family protein-like	-	3e-43	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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