Gene omics information

Query gene ID	Zm.16289.1.A1_at
Gene name	hypothetical protein LOC100217119
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.16289.1.A1_at	BM337131	hypothetical protein LOC100217119	-	2e-2	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	S.X.	H.G.	Please select
0.57	75.1	Zm.2895.7.A1_at	BQ164476	hypothetical protein LOC100275739	-	5e-18	At2g40205	60S ribosomal protein L41 (RPL41C)	S.X.	H.G.	Please select
0.57	75.1	Zm.16644.1.S1_x_at	CF602545	hypothetical protein LOC100191653	-	4e-8	At5g66080	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.19352.1.S1_at	CO532449	-	-	2e-16	At5g49990	xanthine/uracil permease family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.2617.1.A1_at	AI964629	-	-	9e+0	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	S.X.	H.G.	Please select
0.29	28.1	Zm.5922.1.A1_at	CN844887	DNA-binding protein S1FA2	-	2e+0	At1g16250	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.25	21.3	Zm.13811.1.A1_at	AY104705.1	-	-	2e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.3	99.6	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
23.7	99.5	GSM258184	Mo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
20.3	99.3	GSM258183	B84 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
20.1	99.3	GSM258182	B73 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
13.8	98.8	GSM258202	B14a 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
12.8	98.7	GSM258187	B84xB73 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
12.5	98.7	GSM258189	Oh43xMo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
12.4	98.7	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM258203	W22 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
7.9	97.9	GSM258188	Oh43xB73 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-16	85	Zm.14040.1.A1_at	CF051487	C-4 methylsterol oxidase	-	6e-20	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.1035.1.S1_at	U17351.1	thiamine biosynthetic enzyme	-	5e-5	At5g54770	THI1	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4615.1.A1_at	AY078158.1	Non-hemic monooxygenase	-	2e-44	At2g29390	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.14399.1.S1_at	AY615521.1	ABCF-type protein	-	1e-31	At5g09930	ATGCN2	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.8790.1.A1_at	CF005102	-	-	7e+0	At5g18150	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.8492.1.A1_at	CO518733	cyclin-dependent kinases regulatory subunit	-	4e-7	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.8540.1.A1_at	BM079841	hypothetical protein LOC100193457	-	4e-36	At5g63440	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.7152.1.A1_at	AY110483.1	hypothetical protein LOC100216962	-	7e-5	At5g47500	pectinesterase family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.6771.1.A1_at	CF629244	growth-regulating factor 13-like	-	3e-5	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-2	40	Arabidopsis thaliana	At4g12110	826819	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-6	54	Glycine max	Gma.3046.1.S1_at	BQ741319	-	-	5e-20	At4g22753	SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3)	C.G.	S.X.	Please select
0.16	8e-10	63	Hordeum vulgare	Contig6208_at	Contig6208	-	-	2e-10	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	C.G.	S.X.	Please select
0.14	5e-8	59	Oryza sativa	Os10g0545200	AK061779.1	-	Sterol desaturase family protein	1e-8	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-2	40	Populus trichocarpa	PtpAffx.61626.2.S1_a_at	CF236403	hypothetical protein	-	3e-27	At4g22753	SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	7e-12	71	Triticum aestivum	Ta.17157.1.S1_at	CA618261	-	-	7e-2	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	C.G.	S.X.	Please select
0.02	4e-1	34	Vitis vinifera	1606594_at	CB970566	hypothetical protein LOC100250099	-	5e+0	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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