Gene omics information

Query gene ID	Zm.16281.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.16281.1.S1_at	BM378604	-	-	2e-18	At5g10980	histone H3	S.X.	H.G.	Please select
0.67	85.8	Zm.18270.1.A1_at	CA399376	Hypothetical protein LOC100194036	-	3e-6	At4g37200	HCF164	S.X.	H.G.	Please select
0.65	82.1	Zm.554.1.A1_at	CF630610	glutathione transferase28	-	1e-1	At1g17170	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	S.X.	H.G.	Please select
0.63	81.1	Zm.11624.1.A1_at	CF637935	thioredoxin H-type	-	3e-1	At3g51030	ATTRX1	S.X.	H.G.	Please select
0.63	81.1	Zm.10174.1.S1_at	AY111125.1	-	-	4e+0	At2g47370	-	S.X.	H.G.	Please select
0.61	79.5	Zm.6874.2.S1_a_at	CF637577	hypothetical protein LOC100193230	-	3e-3	At2g45430	DNA-binding protein-related	S.X.	H.G.	Please select
0.56	74.4	Zm.14125.1.A1_at	CO533246	hypothetical protein LOC100273725	-	3e-4	At3g51280	male sterility MS5, putative	S.X.	H.G.	Please select
0.55	71.6	Zm.14428.1.S1_at	AY106109.1	cyclin-L2	-	4e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	S.X.	H.G.	Please select
0.50	65.7	Zm.13249.2.A1_x_at	CF012746	-	-	1e+0	At1g35255	unknown protein	S.X.	H.G.	Please select
0.48	61.3	Zm.4090.1.A1_at	AI834563	-	-	4e-1	At2g41080	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.5	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.0	97.3	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.7	97.2	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.5	97.1	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.2	96.9	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.0	96.7	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.0	96.7	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.0	96.7	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.9	96.7	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	1160	Zm.16281.1.S1_x_at	BM378604	-	-	2e-18	At5g10980	histone H3	C.G.	S.X.	Please select
0.64	0	831	Zm.16281.2.S1_at	CA409032	Histone H3.2	-	9e-21	At5g10980	histone H3	C.G.	S.X.	Please select
0.55	5e-177	619	Zm.14513.7.A1_at	BM072973	Histone H3.2	-	5e-25	At5g10980	histone H3	C.G.	S.X.	Please select
0.52	3e-172	603	Zm.3624.2.S1_at	CB617097	-	-	1e-31	At1g09200	histone H3	C.G.	S.X.	Please select
0.50	5e-171	599	Zm.14513.9.S1_at	CA403750	Histone H3.2	-	2e-9	At5g10980	histone H3	C.G.	S.X.	Please select
0.52	3e-169	593	Zm.14513.5.S1_at	CF633873	Histone H3.2	-	3e-29	At1g09200	histone H3	C.G.	S.X.	Please select
0.48	1e-165	581	Zm.17102.1.A1_at	CD527578	Histone H3.2	-	4e-29	At1g09200	histone H3	C.G.	S.X.	Please select
0.54	1e-156	551	Zm.16263.1.A1_at	AI691501	Histone H3.2	-	3e-32	At1g09200	histone H3	C.G.	S.X.	Please select
0.51	2e-155	547	Zm.3624.1.A1_at	BM379445	Histone H3.2	-	9e-27	At1g09200	histone H3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-18	93	Arabidopsis thaliana	At5g10980	830965	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.58	1e-94	347	Glycine max	PsAffx.C1000261_at	PsAffx.C1000261	-	-	1e-15	At5g10980	histone H3	C.G.	S.X.	Please select
0.59	1e-168	591	Hordeum vulgare	Contig82_at	Contig82	-	-	2e-30	At1g09200	histone H3	C.G.	S.X.	Please select
0.58	1e-147	523	Oryza sativa	Os04g0419600	CR282432	-	Histone H3	5e-21	At1g09200	histone H3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	2e-12	73	Populus trichocarpa	PtpAffx.6315.2.S1_a_at	CV261215	histone H3	-	1e-47	At4g40030	histone H3.2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	2e-138	492	Triticum aestivum	Ta.28495.1.S1_x_at	BJ207229	-	-	2e-33	At1g09200	histone H3	C.G.	S.X.	Please select
0.51	2e-52	204	Vitis vinifera	1622440_at	CF372331	similar to predicted protein	-	5e-43	At5g10400	histone H3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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