Gene omics information

Query gene ID	Zm.16266.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.6	Zm.16266.1.S1_at	CF243553	-	-	2e+0	At4g24160	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.2418.1.S1_at	BM379344	VIP3 protein	-	1e-4	At1g08780	AIP3 (ABI3-INTERACTING PROTEIN 3)	S.X.	H.G.	Please select
0.36	41.3	Zm.18469.1.S1_at	BM378527	oxidoreductase	-	2e-7	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.34	37.2	Zm.18485.1.S1_at	AY104422.1	DNA binding protein	-	4e-8	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	S.X.	H.G.	Please select
0.34	37.2	Zm.13026.1.A1_a_at	AY111398.1	-	-	3e-1	At4g28930	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.18283.1.A1_at	BG841297	hypothetical protein LOC100217202 /// hypothetical protein LOC100217213	-	5e+0	At5g49540	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.9565.1.A1_at	BM381516	beta-expansin 3	-	6e-1	At4g19270	unknown protein	S.X.	H.G.	Please select
0.30	29.8	ZmAffx.51.1.A1_at	AI665015	Hypothetical protein LOC100217062	-	1e+1	At5g54215	-	S.X.	H.G.	Please select
0.29	28.1	Zm.15678.3.A1_x_at	BM073330	hypothetical protein LOC100193991 /// hypothetical protein LOC100273150 /// hypothetical protein LOC100277471	-	3e+0	At5g16640	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.26	22.7	Zm.4335.3.A1_at	AY109325.1	-	-	1e-3	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.3640.1.A1_at	AY111661.1	hypothetical protein LOC100277622	-	4e+0	At5g56865	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	ZmAffx.940.1.S1_at	AI820350	hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	C.G.	S.X.	Please select
0.02	9e-1	34	ZmAffx.940.1.A1_at	AI820350	Hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.7076.1.S1_at	BM334411	-	-	6e-19	At3g21700	SGP2	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.6367.1.S1_at	BM259420	-	-	3e-1	At4g26200	ACS7	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.3143.1.S1_at	CK986096	hypothetical protein LOC100272286	-	3e+0	At1g07130	STN1	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.16493.1.S1_at	BM331720	ATP-dependent Clp protease proteolytic subunit	-	6e-1	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.1066.1.A1_at	AI881975	-	-	1e+1	At2g21780	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.1066.1.S1_at	AI881975	-	-	1e+1	At2g21780	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g24160	828516	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	HgAffx.18896.1.S1_at	CA940284	-	-	4e+0	At5g05120	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.09	3e-7	56	Hordeum vulgare	Contig13404_at	Contig13404	-	-	2e+0	At1g76750	unknown protein	C.G.	S.X.	Please select
0.05	3e-7	57	Oryza sativa	Os02g0832200	AK108268.1	-	Conserved hypothetical protein	3e-2	At1g20816	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.223649.1.S1_at	pmrna41741	hypothetical protein	-	1e-33	At4g38780	splicing factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	4e-11	69	Triticum aestivum	Ta.9145.1.S1_at	CK169118	-	-	2e+0	At3g27350	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1622333_at	CD799818	hypothetical protein LOC100264006	-	6e-25	At2g47260	WRKY23	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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