Gene omics information

Query gene ID	Zm.16259.3.A1_x_at
Gene name	hypothetical protein LOC100273269
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.16259.3.A1_x_at	AI395995	hypothetical protein LOC100273269	-	2e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	S.X.	H.G.	Please select
0.55	71.6	Zm.5054.1.A1_at	AI600551	polygalacturonase	-	3e+0	At1g61340	F-box family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2135.1.S1_at	CD436684	hypothetical protein LOC100217069	-	4e-26	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	S.X.	H.G.	Please select
0.50	65.7	Zm.4355.1.A1_at	CK827466	seed maturation protein	-	2e+0	At5g10140	FLC (FLOWERING LOCUS C)	S.X.	H.G.	Please select
0.46	58.4	Zm.14384.1.A1_at	CK144440	hypothetical protein LOC100191907	-	1e-1	At3g25850	DC1 domain-containing protein	S.X.	H.G.	Please select
0.25	21.3	Zm.6948.1.A1_at	AW288752	serine/threonine-protein phosphatase PP1	-	8e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	97.5	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.2	97.4	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.1	97.4	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.0	97.3	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.0	97.3	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.4	97.0	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.4	97.0	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	3e-127	452	Zm.16259.3.A1_a_at	AI395995	hypothetical protein LOC100273269	-	2e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	C.G.	S.X.	Please select
0.46	2e-103	373	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.44	1e-55	214	Zm.16259.2.A1_x_at	CD951359	hypothetical protein LOC100273269	-	4e-7	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.18	3e-25	113	Zm.16911.1.A1_at	BM332269	-	-	3e-11	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.18	2e-17	87	Zm.14706.1.S1_at	AY103710.1	-	-	2e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.12	5e-15	79	Zm.15894.1.A1_at	BG873874	-	-	3e-14	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.09	4e-9	59	Zm.888.1.S1_at	CK828040	hypothetical protein LOC100216750	-	1e-7	At1g08880	H2AXA	C.G.	S.X.	Please select
0.03	4e-3	40	Zm.8752.1.A1_at	AY107176.1	hypothetical protein LOC100278587	-	4e-2	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	C.G.	S.X.	Please select
0.03	2e-2	38	Zm.13443.1.A1_at	U08225.1	Histone H2A	-	4e-11	At5g02560	HTA12	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e+0	32	Arabidopsis thaliana	At3g20865	821635	AGP40 (arabinogalactan-protein 40)	Encodes a putative arabinogalactan-protein (AGP40).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-2	40	Glycine max	GmaAffx.31901.1.A1_at	BE657929	-	-	5e-3	At4g33660	unknown protein	C.G.	S.X.	Please select
0.21	8e-14	75	Hordeum vulgare	Contig17259_at	Contig17259	-	-	5e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.09	7e-2	38	Oryza sativa	Os07g0545400	AK059228.1	-	Protein H2A	4e-7	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	32	Populus trichocarpa	PtpAffx.217960.1.S1_at	pmrna33444	hypothetical protein	-	2e+0	At1g26640	aspartate/glutamate/uridylate kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	3e-18	91	Triticum aestivum	Ta.28802.3.S1_at	BJ228498	-	-	1e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1620652_at	CB340675	hypothetical protein LOC100258683	-	1e+0	At1g14315	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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