Gene omics information

Query gene ID	Zm.16259.2.A1_x_at
Gene name	hypothetical protein LOC100273269
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	92.8	Zm.16259.2.A1_x_at	CD951359	hypothetical protein LOC100273269	-	4e-7	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.87	96.4	Zm.6701.1.A1_at	AI619212	glutaredoxin 2	-	9e-2	At4g08280	-	S.X.	H.G.	Please select
0.86	96.3	Zm.4020.1.A1_at	CF637232	hypothetical protein LOC100191912	-	2e-17	At3g07110	60S ribosomal protein L13A (RPL13aA)	S.X.	H.G.	Please select
0.84	95.8	Zm.6638.1.A1_at	AI619165	esterase	-	4e-1	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	S.X.	H.G.	Please select
0.83	95.6	Zm.5480.1.A1_at	AY103756.1	glycine-rich RNA-binding protein 7	-	5e-1	At2g46000	unknown protein	S.X.	H.G.	Please select
0.81	94.3	Zm.18363.1.S1_at	CO529135	hypothetical protein LOC100194297	-	8e-13	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	S.X.	H.G.	Please select
0.81	94.3	Zm.1019.1.A1_at	AW288674	actin-depolymerizing factor 5	-	2e-19	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	S.X.	H.G.	Please select
0.81	94.3	Zm.8925.1.A1_at	BM381305	-	-	2e+0	At5g50360	unknown protein	S.X.	H.G.	Please select
0.81	94.3	Zm.4027.1.S1_a_at	AY104092.1	hypothetical protein LOC100194227 /// hypothetical protein LOC100272558 /// endo-1,3;1,4-beta-D-glucanase	-	3e+0	At2g02030	F-box family protein	S.X.	H.G.	Please select
0.81	94.3	Zm.1405.1.S1_at	BF729113	-	-	3e+0	At4g32080	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.8	97.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.5	97.8	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3	97.8	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.0	97.7	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.9	97.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.4	97.5	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.3	97.4	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.3	97.4	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.2	97.4	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.9	97.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	942	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.51	4e-138	490	Zm.14706.1.S1_at	AY103710.1	-	-	2e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.50	2e-127	454	Zm.16911.1.A1_at	BM332269	-	-	3e-11	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.49	6e-112	402	Zm.15894.1.A1_at	BG873874	-	-	3e-14	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.45	2e-106	385	Zm.6752.1.A1_at	CK826604	splicing factor, arginine/serine-rich 2	-	2e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.40	2e-87	321	Zm.13443.1.A1_at	U08225.1	Histone H2A	-	4e-11	At5g02560	HTA12	C.G.	S.X.	Please select
0.38	6e-66	250	Zm.13002.1.S1_at	CF041204	-	-	1e-10	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.48	3e-55	214	Zm.16259.3.A1_a_at	AI395995	hypothetical protein LOC100273269	-	2e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	C.G.	S.X.	Please select
0.48	3e-55	214	Zm.16259.3.A1_x_at	AI395995	hypothetical protein LOC100273269	-	2e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	4e-7	56	Arabidopsis thaliana	At4g27230	828831	HTA2 (histone H2A)	Encodes HTA2, a histone H2A protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	1e-23	111	Glycine max	PsAffx.psZS009xF02f_at	PsAffx.psZS009xF02f	-	-	3e-4	At5g59870	HTA6	C.G.	S.X.	Please select
0.53	4e-101	367	Hordeum vulgare	Contig118_at	Contig118	-	-	6e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.45	5e-85	315	Oryza sativa	Os03g0279200	CA753594	-	Histone H2A	1e-7	At5g02560	HTA12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-6	54	Populus trichocarpa	PtpAffx.24431.1.A1_at	CV247051	histone 2	-	1e-34	At1g08880	H2AXA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	1e-90	333	Triticum aestivum	TaAffx.128686.3.A1_at	BQ802458	-	-	3e-1	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.15	3e-8	57	Vitis vinifera	1608056_at	CF511408	hypothetical protein LOC100254490	-	4e-31	At1g08880	H2AXA	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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