Gene omics information

Query gene ID	Zm.16259.1.A1_x_at
Gene name	hypothetical protein LOC100273269
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.47	59.9	Zm.6113.1.A1_at	CF630251	-	-	7e-2	At4g22745	MBD1	S.X.	H.G.	Please select
0.36	41.3	Zm.10656.1.A1_at	BQ538423	hypothetical protein LOC100216802	-	3e+0	At4g25570	ACYB-2	S.X.	H.G.	Please select
0.28	28.1	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	S.X.	H.G.	Please select
0.26	22.7	Zm.6787.1.A1_a_at	AF277454.1	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	S.X.	H.G.	Please select
0.20	14.2	Zm.13232.1.S1_at	CA452744	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.0	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.1	97.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.1	97.7	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.0	97.7	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.7	97.6	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.3	97.4	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.3	97.4	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.1	97.4	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.0	97.3	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.9	97.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	942	Zm.16259.2.A1_x_at	CD951359	hypothetical protein LOC100273269	-	4e-7	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.58	5e-143	506	Zm.14706.1.S1_at	AY103710.1	-	-	2e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.54	2e-133	474	Zm.16911.1.A1_at	BM332269	-	-	3e-11	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.52	9e-117	418	Zm.15894.1.A1_at	BG873874	-	-	3e-14	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.51	5e-109	393	Zm.6752.1.A1_at	CK826604	splicing factor, arginine/serine-rich 2	-	2e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.46	5e-103	373	Zm.16259.3.A1_a_at	AI395995	hypothetical protein LOC100273269	-	2e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	C.G.	S.X.	Please select
0.46	5e-103	373	Zm.16259.3.A1_x_at	AI395995	hypothetical protein LOC100273269	-	2e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	C.G.	S.X.	Please select
0.44	4e-85	313	Zm.13443.1.A1_at	U08225.1	Histone H2A	-	4e-11	At5g02560	HTA12	C.G.	S.X.	Please select
0.41	1e-69	262	Zm.13002.1.S1_at	CF041204	-	-	1e-10	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-6	54	Arabidopsis thaliana	At4g27230	828831	HTA2 (histone H2A)	Encodes HTA2, a histone H2A protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	6e-25	115	Glycine max	PsAffx.psZS009xF02f_at	PsAffx.psZS009xF02f	-	-	3e-4	At5g59870	HTA6	C.G.	S.X.	Please select
0.58	1e-103	375	Hordeum vulgare	Contig118_at	Contig118	-	-	6e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.50	3e-89	329	Oryza sativa	Os03g0279200	CA753594	-	Histone H2A	1e-7	At5g02560	HTA12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-6	54	Populus trichocarpa	PtpAffx.24431.1.A1_at	CV247051	histone 2	-	1e-34	At1g08880	H2AXA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	4e-96	351	Triticum aestivum	TaAffx.128686.3.A1_at	BQ802458	-	-	3e-1	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.17	4e-10	63	Vitis vinifera	1608056_at	CF511408	hypothetical protein LOC100254490	-	4e-31	At1g08880	H2AXA	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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