Gene omics information

Query gene ID	Zm.16207.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.16207.1.S1_at	AY109575.1	-	-	6e-43	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.1864.1.A1_at	CF634917	-	-	5e+0	At4g21470	ATFMN/FHY (riboflavin kinase/FMN hydrolase)	S.X.	H.G.	Please select
0.46	58.4	Zm.12626.2.A1_a_at	BG841446	craniofacial development protein 1	-	3e-1	At1g01640	speckle-type POZ protein-related	S.X.	H.G.	Please select
0.44	55.7	Zm.17686.1.A1_at	CF632894	-	-	3e-1	At5g52270	vesicle transport protein-related	S.X.	H.G.	Please select
0.31	31.6	Zm.13143.1.A1_at	AY105306.1	hypothetical protein LOC100191497	-	6e-1	At3g24100	-	S.X.	H.G.	Please select
0.12	5.9	Zm.12429.1.A1_at	CA403429	conserved protein	-	3e-9	At5g19300	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.2	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.1	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.3	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	2692	Zm.16207.1.A1_at	AW355980	Phosphoglucomutase 1	-	6e-43	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	C.G.	S.X.	Please select
0.52	0	2387	Zm.3167.1.S1_s_at	U89342.1	phosphoglucomutase 2	-	1e-49	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	C.G.	S.X.	Please select
0.50	0	2103	Zm.399.1.S1_at	U89341.1	phosphoglucomutase 1	-	2e-42	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.5426.1.S1_at	BG268286	hypothetical protein LOC100191235	-	3e-24	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.4518.1.A1_at	CO528211	-	-	2e+0	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.15296.1.S1_at	BQ538198	hypothetical protein LOC100279215	-	2e-1	At1g06590	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.3942.1.A1_at	CD998416	hypothetical protein LOC100192575	-	2e-7	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17966.2.A1_a_at	CK826966	hypothetical protein LOC100273767	-	6e+0	At2g37910	cation/hydrogen exchanger, putative (CHX21)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17753.1.S1_at	CK371208	Hypothetical protein LOC100192575	-	7e-1	At3g57950	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	6e-43	176	Arabidopsis thaliana	At1g23190	838927	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	F:intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity;P:response to cadmium ion, carbohydrate metabolic process;C:cytosol, nucleus, plasma membrane, chloroplast, cytoplasm;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	1e-47	192	Glycine max	Gma.15483.1.S1_at	BE820423	-	-	2e-79	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	C.G.	S.X.	Please select
0.36	0	918	Hordeum vulgare	Contig1650_at	Contig1650	-	-	3e-35	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	C.G.	S.X.	Please select
0.43	0	1191	Oryza sativa	Os03g0712700	AK121196.1	-	Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)(Glucose phosphomutase 2) (PGM 2)	4e-1	At2g30560	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	8e-40	167	Populus trichocarpa	PtpAffx.163029.1.S1_at	CF230691	hypothetical protein	-	4e-69	At1g70730	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	0	787	Triticum aestivum	Ta.24519.1.S1_a_at	CD454096	phosphoglucomutase	-	1e-22	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	C.G.	S.X.	Please select
0.12	3e-51	202	Vitis vinifera	1607462_at	BQ794751	hypothetical protein LOC100266376	-	3e-90	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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