Gene omics information

Query gene ID	Zm.1616.1.A1_at
Gene name	plasma membrane-bound peroxidase 3-1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.1616.1.A1_at	BM380022	plasma membrane-bound peroxidase 3-1	-	6e-2	At1g14540	anionic peroxidase, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.16159.1.A1_at	CF244218	ubiquitin-protein ligase	-	3e+0	At5g35230	unknown protein	S.X.	H.G.	Please select
0.22	16.9	Zm.4826.1.A1_at	AY107837.1	signal peptide peptidase-like 2B	-	7e-13	At1g63690	protease-associated (PA) domain-containing protein	S.X.	H.G.	Please select
0.13	6.8	Zm.16532.3.A1_x_at	BM380477	60S ribosomal protein L18a	-	2e-64	At2g34480	60S ribosomal protein L18A (RPL18aB)	S.X.	H.G.	Please select
0.04	1.5	Zm.2122.1.A1_at	AI600377	-	-	9e-2	At3g16870	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.02	0.7	Zm.7295.1.S1_at	CO526541	hypothetical protein LOC100276937 /// low-molecular-weight cysteine-rich protein LCR69	-	2e-2	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.8	99.7	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM202407	Zmet2 study 11-day seedling aerial tissue genotype Mo17 zmet2-m1 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
5.5	97.1	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.5	96.3	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM258184	Mo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.3	96.1	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.2	96.0	GSM202277	Mo17 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
4.2	96.0	GSM258175	Mo17 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.1	95.9	GSM202411	Zmet2 study 11-day seedling aerial tissue genotype Mo17 zmet2-m1 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	2e-101	369	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.35	3e-51	202	Zm.2707.1.S1_at	BG842199	-	-	2e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.17	2e-15	83	Zm.10660.1.A1_at	CF634854	Plasma membrane-bound peroxidase 2b	-	8e-3	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.12	3e-14	79	Zm.9856.1.S1_at	BM381423	hypothetical protein LOC100272496	-	4e-2	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.10	3e-14	79	Zm.3095.1.S1_at	CO524214	hypothetical protein LOC100192080	-	4e-2	At5g17820	peroxidase 57 (PER57) (P57) (PRXR10)	C.G.	S.X.	Please select
0.07	7e-12	71	Zm.5170.1.S1_at	CF349172	hypothetical protein LOC100216995	-	1e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.03	1e-10	67	Zm.404.1.S1_at	AF037033.1	anionic peroxidase H	-	8e-3	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.06	2e-9	63	Zm.4894.1.A1_at	BM076024	-	-	1e+0	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.04	2e-9	63	Zm.16643.1.S1_at	CK144844	peroxidase 27	-	3e-3	At1g44970	peroxidase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-2	40	Arabidopsis thaliana	At1g14540	838016	anionic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-4	48	Glycine max	Gma.6564.1.S1_at	BQ613091	-	-	1e-2	At3g49110	PRXCA (PEROXIDASE CA)	C.G.	S.X.	Please select
0.36	5e-50	198	Hordeum vulgare	Contig2114_s_at	Contig2114	-	-	7e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.34	9e-58	226	Oryza sativa	Os07g0677500	AF247700.2	-	Peroxidase POC1	2e-4	At5g05340	peroxidase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e-3	44	Populus trichocarpa	Ptp.3276.1.S1_at	BU813853	-	-	3e-1	At4g02450	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	1e-61	238	Triticum aestivum	TaAffx.85486.1.S1_at	CA622309	-	-	3e-4	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Vitis vinifera	1616555_s_at	CB343780	-	-	1e+1	At4g35165	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage