Gene omics information

Query gene ID	Zm.16146.1.A1_at
Gene name	hypothetical protein LOC100192115
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.16146.1.A1_at	CF632443	hypothetical protein LOC100192115	-	3e+0	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	S.X.	H.G.	Please select
0.73	89.9	Zm.7597.1.A1_at	BM079101	-	-	7e-2	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	S.X.	H.G.	Please select
0.50	65.7	Zm.9720.1.A1_at	BM336624	-	-	4e+0	At5g35300	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.18237.1.S1_at	CN845290	mitochondrial carrier protein CGI-69	-	3e-6	At4g27940	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.301.2.A1_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	S.X.	H.G.	Please select
0.36	41.3	Zm.10571.1.A1_at	BQ538363	hypothetical protein LOC100216835	-	3e-1	At3g60360	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	5e-22	105	Zm.4726.1.S1_at	AY109136.1	histidinol dehydrogenase	-	1e-64	At5g63890	ATHDH (HISTIDINOL DEHYDROGENASE)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.2090.1.A1_at	AI691653	heterogeneous nuclear ribonucleoprotein R	-	5e+0	At5g28052	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7596.1.A1_at	BM079087	hypothetical protein LOC100216955	-	6e+0	At5g42504	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Zm.6530.1.A1_at	BM269488	MYB-CC type transfactor	-	4e-18	At2g01060	myb family transcription factor	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.2671.1.S1_at	AW066803	-	-	3e+0	At1g26150	PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.8419.1.A1_at	CA403791	hypothetical protein LOC100191238	-	7e-1	At1g18210	calcium-binding protein, putative	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.535.1.S1_at	AF318579.1	hypothetical LOC542493	-	7e-2	At2g20570	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.3274.1.S1_at	AY108394.1	-	-	3e-1	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.3274.1.A1_at	AY108394.1	hypothetical protein LOC100273824	-	3e-1	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g47630	834813	mtACP3 (mitochondrial acyl carrier protein 3)	Encodes a member of the mitochondrial acyl carrier protein (ACP) family. Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	6e-15	83	Glycine max	Gma.4703.1.A1_at	BI968849	-	-	9e-10	At1g65420	unknown protein	C.G.	S.X.	Please select
0.24	5e-90	331	Hordeum vulgare	Contig8075_at	Contig8075	-	-	5e-8	At1g65420	unknown protein	C.G.	S.X.	Please select
0.28	2e-86	321	Oryza sativa	OsAffx.24238.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	8e-11	69	Populus trichocarpa	PtpAffx.8535.1.S1_at	BU868662	hypothetical protein	-	7e-18	At1g65420	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	6e-8	59	Triticum aestivum	Ta.5034.1.S1_at	BT009125.1	-	-	3e-62	At5g63890	ATHDH (HISTIDINOL DEHYDROGENASE)	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1621970_at	CD713131	hypothetical protein LOC100243642	-	9e-2	At3g58210	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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