CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.16049.2.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.16049.2.A1_at CF042888 - - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) S.X. H.G.
0.55 71.6 Zm.9839.1.A1_at BM339393 Hypothetical protein LOC100193033 - 3e+0 At2g17300 unknown protein S.X. H.G.
0.50 65.7 Zm.16315.1.S1_a_at AF326488.1 plasma membrane integral protein ZmPIP1-3 - 3e-24 At3g61430 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) S.X. H.G.
0.50 65.7 Zm.869.2.S1_at AI711751 Hypothetical protein LOC100192365 - 6e+0 At5g15560 unknown protein S.X. H.G.
0.40 48.5 Zm.1194.1.S1_at CA403262 fasciclin-like arabinogalactan protein 10 - 2e-1 At5g52930 unknown protein S.X. H.G.
0.36 41.3 Zm.7607.1.A1_at BM335952 hypothetical protein LOC100192716 - 6e+0 At5g20910 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.0 94.0 GSM205423 B73xMo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.6 92.9 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.6 92.9 GSM205421 B73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.5 92.6 GSM205433 B73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.5 92.6 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.3 91.7 GSM205425 B73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.2 91.3 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.1 90.8 GSM205427 Mo17xB73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.0 90.2 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.0 90.2 GSM205434 Mo17xB73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.88 0 930 Zm.16049.2.A1_x_at CF042888 - - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.88 0 930 Zm.16049.2.A1_a_at CF042888 40S ribosomal protein S28 - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.49 0 686 Zm.16049.4.A1_at BE475781 - - 1e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 2e-111 400 Zm.16049.1.S1_at BM888637 40S ribosomal protein S28 - 8e-5 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 2e-111 400 Zm.16049.1.S1_x_at BM888637 40S ribosomal protein S28 - 8e-5 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.33 2e-102 371 Zm.16049.3.S1_at CF635696 Ribosomal protein S28 - 1e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 5e-84 309 Zm.14007.1.A1_s_at CA831578 40S ribosomal protein S28 - 3e-7 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 5e-84 309 Zm.14007.2.A1_at CF017494 - - 3e-7 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 5e-84 309 Zm.14007.1.A1_at CA831578 - - 3e-7 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 3e-4 46 Arabidopsis thaliana At5g03850 831692 40S ribosomal protein S28 (RPS28B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPF - - - C.G. S.X.
0.23 3e-14 79 Glycine max GmaAffx.60550.2.S1_at CA783622 - - 1e-12 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.32 8e-68 256 Hordeum vulgare Contig3403_s_at Contig3403 - - 2e-2 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.31 8e-68 258 Oryza sativa Os10g0411700 AK058209.1 - Ribosomal protein S28 5e-3 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.15 2e-6 54 Populus trichocarpa PtpAffx.77827.1.A1_s_at CK092187 hypothetical protein - 7e-11 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.46 1e-65 250 Triticum aestivum Ta.17242.2.S1_at CD490808 S28 ribosomal protein - 4e-3 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.30 1e-31 135 Vitis vinifera 1610667_s_at CD799449 hypothetical protein LOC100241860 - 4e-9 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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