CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.16049.1.S1_at

Gene name 40S ribosomal protein S28

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.16049.1.S1_at BM888637 40S ribosomal protein S28 - 8e-5 At5g03850 40S ribosomal protein S28 (RPS28B) S.X. H.G.
0.67 85.8 Zm.6894.1.A1_at BM380620 - - 7e-47 At1g69830 AMY3 (ALPHA-AMYLASE-LIKE 3) S.X. H.G.
0.63 81.1 Zm.6195.1.A1_x_at AI668513 hypothetical protein LOC100275106 - 4e+0 At4g17790 - S.X. H.G.
0.33 36.0 Zm.17513.1.A1_at BM074532 MFP1 attachment factor 1 - 5e+0 At1g22840 CYTC-1 (CYTOCHROME C-1) S.X. H.G.
0.29 28.1 Zm.5825.1.A1_at AI649790 hypothetical protein LOC100279429 - 1e-2 At1g10390 nucleoporin family protein S.X. H.G.
0.28 28.1 Zm.1693.1.A1_at BM382165 - - 4e-3 At3g55670 - S.X. H.G.
0.20 14.2 ZmAffx.485.1.A1_at AI691349 - - 8e-1 Atmg00140 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.3 98.5 GSM253245 ZM_12h_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
8.6 98.1 GSM258201 Wf9 11-day seedling aerial tissue biological replicate 1 GSE10237 Gene expression variation among eight maize inbreds
8.6 98.1 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
8.5 98.1 GSM253252 ZM_24h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
8.0 98.0 GSM323171 Zm_SG200Dpep1_24hpi_II GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
7.6 97.9 GSM258202 B14a 11-day seedling aerial tissue biological replicate 2 GSE10237 Gene expression variation among eight maize inbreds
7.5 97.8 GSM258204 Wf9 11-day seedling aerial tissue biological replicate 2 GSE10237 Gene expression variation among eight maize inbreds
7.1 97.7 GSM258207 Wf9 11-day seedling aerial tissue biological replicate 3 GSE10237 Gene expression variation among eight maize inbreds
6.9 97.7 GSM253247 ZM_12h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
6.6 97.6 GSM253266 ZM_4d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.92 0 856 Zm.16049.1.S1_x_at BM888637 40S ribosomal protein S28 - 8e-5 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.43 3e-153 539 Zm.16049.3.S1_at CF635696 Ribosomal protein S28 - 1e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 2e-111 400 Zm.16049.2.A1_x_at CF042888 - - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.29 2e-111 400 Zm.16049.4.A1_at BE475781 - - 1e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 2e-111 400 Zm.16049.2.A1_at CF042888 - - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 2e-111 400 Zm.16049.2.A1_a_at CF042888 40S ribosomal protein S28 - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.35 2e-92 337 Zm.14007.1.A1_s_at CA831578 40S ribosomal protein S28 - 3e-7 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.40 2e-92 337 Zm.14007.2.A1_at CF017494 - - 3e-7 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.35 2e-92 337 Zm.14007.1.A1_at CA831578 - - 3e-7 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 8e-5 48 Arabidopsis thaliana At5g03850 831692 40S ribosomal protein S28 (RPS28B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPF - - - C.G. S.X.
0.23 8e-18 91 Glycine max GmaAffx.60550.2.S1_at CA783622 - - 1e-12 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.32 9e-74 276 Hordeum vulgare Contig3403_s_at Contig3403 - - 2e-2 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.30 6e-81 301 Oryza sativa Os10g0411700 AK058209.1 - Ribosomal protein S28 5e-3 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.13 8e-15 81 Populus trichocarpa Ptp.4340.1.S1_at CX167767 hypothetical protein - 3e-20 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.37 2e-107 389 Triticum aestivum Ta.26780.1.A1_at CD491141 - - 7e-8 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.28 2e-30 131 Vitis vinifera 1610667_s_at CD799449 hypothetical protein LOC100241860 - 4e-9 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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