Gene omics information

Query gene ID	Zm.15982.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.15982.1.S1_at	CD970705	-	-	4e+0	At5g55430	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.16066.1.A1_x_at	CF021627	-	-	2e-1	At2g41940	ZFP8 (ZINC FINGER PROTEIN 8)	S.X.	H.G.	Please select
0.44	55.7	Zm.12134.2.S1_a_at	AY106643.1	hypothetical protein LOC100193898	-	1e+0	At4g08691	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.17375.1.A1_at	CK370664	-	-	7e-1	At4g02370	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.12252.1.A1_at	CF243994	DC2 protein	-	2e+0	At4g14640	CAM8 (CALMODULIN 8)	S.X.	H.G.	Please select
0.08	3.4	Zm.6244.1.A1_x_at	CF623141	-	-	8e-3	At2g37650	scarecrow-like transcription factor 9 (SCL9)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.3	99.8	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
31.0	99.8	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
29.6	99.8	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
28.2	99.7	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
16.9	99.1	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
13.8	98.8	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.9	98.2	GSM258183	B84 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
8.5	98.1	GSM258192	B84 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
8.3	98.0	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.1	98.0	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	803	Zm.15982.1.S1_s_at	CD970705	-	-	4e+0	At5g55430	unknown protein	C.G.	S.X.	Please select
0.32	2e-95	347	Zm.10200.2.A1_at	BM078569	-	-	1e+0	At5g57990	UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6152.1.S1_at	AI676863	RING zinc finger protein-like /// small basic membrane intrinsic protein1b	-	4e-15	At3g29270	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.610.1.A1_at	AF326498.1	small basic membrane intrinsic protein1b	-	1e-1	At4g16360	AMP-activated protein kinase	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.4731.1.A1_at	AY107236.1	-	-	3e-1	At1g55160	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2740.1.A1_at	CA402161	hypothetical protein LOC100191297	-	7e-1	At1g02840	SR1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18024.1.S1_at	AY530730.1	thylakoid assembly8	-	3e-2	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17214.1.A1_at	AW054475	hypothetical protein LOC100273845	-	4e-8	At4g28450	nucleotide binding / protein binding	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.570.1.A1_at	AI714682	hypothetical protein LOC100191413	-	1e-2	At2g04280	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g55430	835636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFVPBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	GmaAffx.85871.1.S1_at	BE806323	-	-	1e-9	At4g33985	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Hordeum vulgare	Contig10475_at	Contig10475	-	-	1e-7	At1g13690	ATE1	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.32337.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.58371.1.S1_s_at	BU823494	hypothetical protein	-	6e-2	At3g51740	IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	38	Triticum aestivum	Ta.28037.1.A1_at	BF428544	-	-	3e+0	At5g23240	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.05	5e-3	40	Vitis vinifera	1609409_at	CD802127	-	-	2e+0	At2g04675	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage