Gene omics information

Query gene ID	Zm.15937.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.15937.1.A1_at	CO520791	-	-	5e+0	At3g25200	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.5775.1.A1_at	AI649573	-	-	1e+1	At3g06600	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.53.1.S1_at	AB021176.1	root cap periphery gene2	-	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	S.X.	H.G.	Please select
0.63	81.1	Zm.17267.1.S1_at	CK368940	hypothetical protein LOC100275082	-	5e-1	At1g80920	J8	S.X.	H.G.	Please select
0.57	75.1	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	S.X.	H.G.	Please select
0.56	74.4	Zm.16895.1.A1_at	BM075234	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	S.X.	H.G.	Please select
0.55	71.6	Zm.13664.1.S1_at	BG836397	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1052.1.S1_at	AI881839	KH domain containing protein	-	3e+0	At1g75090	methyladenine glycosylase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.9	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.7	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM206314	Upper pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	42	Zm.18395.1.S1_at	CO527972	-	-	9e+0	At5g04150	BHLH101	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.11813.1.A1_at	BM380942	hypothetical protein LOC100192995	-	5e+0	At3g08980	signal peptidase I family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.8375.1.A1_at	BM080176	-	-	2e-2	At5g25450	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.4094.1.A1_a_at	BG266607	hypothetical protein LOC100217158	-	1e+1	At5g39250	F-box family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9973.1.A1_at	BM350441	-	-	2e+0	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.1005.1.A1_at	AI881362	Lipoxygenase	-	3e+0	At1g04130	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.1005.1.S1_at	AI881362	lipoxygenase	-	3e+0	At1g04130	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8880.1.S1_at	BM381716	hypothetical protein LOC100193583	-	6e-35	At5g66140	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7732.1.A1_at	BQ538322	benzoate carboxyl methyltransferase	-	3e-2	At3g21950	methyltransferase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g25200	822113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	PsAffx.psHB031xK24f_s_at	PsAffx.psHB031xK24f	-	-	5e-1	At5g52730	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.24	2e-16	85	Hordeum vulgare	HV_CEa0008F11r2_at	HV_CEa0008F11r2	-	-	4e+0	At5g39540	-	C.G.	S.X.	Please select
0.23	5e-69	262	Oryza sativa	Os01g0775400	AK101022.1	-	FAD linked oxidase, N-terminal domain containingprotein	7e-8	At1g75450	CKX5 (CYTOKININ OXIDASE 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e+0	32	Populus trichocarpa	PtpAffx.222149.1.S1_at	pmrna39390	hypothetical protein	-	2e+1	At4g27657	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-24	113	Triticum aestivum	Ta.8246.1.A1_at	BQ161648	-	-	1e+1	At5g08770	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1607672_at	CF511426	hypothetical protein LOC100242244	-	2e-1	At3g53235	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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