Gene omics information

Query gene ID	Zm.15894.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.15894.1.A1_at	BG873874	-	-	3e-14	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.60	77.8	Zm.5481.1.A1_at	CO534121	-	-	7e-2	At5g47455	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.13249.1.S1_a_at	X98496.1	embryo surrounding region1 /// ESR1c1 protein	-	7e-2	At1g29380	-	S.X.	H.G.	Please select
0.31	31.6	Zm.5565.1.S1_at	D45402.1	cysteine protease1	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	S.X.	H.G.	Please select
0.27	24.6	Zm.12021.1.A1_at	BM382722	hypothetical protein LOC100273474	-	4e+0	At5g10140	FLC (FLOWERING LOCUS C)	S.X.	H.G.	Please select
0.19	12.8	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	98.7	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.0	98.6	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.3	98.4	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.7	97.9	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.1	97.7	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.4	97.5	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.2	96.9	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.2	96.9	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.8	96.6	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
4.7	96.5	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	646	Zm.16911.1.A1_at	BM332269	-	-	3e-11	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.46	1e-131	468	Zm.6752.1.A1_at	CK826604	splicing factor, arginine/serine-rich 2	-	2e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.46	3e-126	450	Zm.14706.1.S1_at	AY103710.1	-	-	2e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.53	1e-116	418	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.49	7e-112	402	Zm.16259.2.A1_x_at	CD951359	hypothetical protein LOC100273269	-	4e-7	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.40	1e-97	355	Zm.13443.1.A1_at	U08225.1	Histone H2A	-	4e-11	At5g02560	HTA12	C.G.	S.X.	Please select
0.39	4e-76	284	Zm.13002.1.S1_at	CF041204	-	-	1e-10	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.30	6e-60	230	Zm.888.1.S1_at	CK828040	hypothetical protein LOC100216750	-	1e-7	At1g08880	H2AXA	C.G.	S.X.	Please select
0.25	1e-36	153	Zm.6778.1.S1_at	AY105006.1	-	-	2e-15	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-14	79	Arabidopsis thaliana	At4g27230	828831	HTA2 (histone H2A)	Encodes HTA2, a histone H2A protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	2e-7	57	Glycine max	PsAffx.C4000035_at	PsAffx.C4000035	-	-	4e+0	At5g59870	HTA6	C.G.	S.X.	Please select
0.48	7e-100	363	Hordeum vulgare	Contig118_at	Contig118	-	-	6e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.38	6e-82	305	Oryza sativa	Os05g0113900	AK074018.1	-	Histone H2A	2e-9	At1g08880	H2AXA	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	6e-4	46	Populus trichocarpa	Ptp.2920.1.S1_at	CF936621	histone 2	-	4e-17	At1g51060	HTA10	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	1e-90	333	Triticum aestivum	TaAffx.128686.3.A1_at	BQ802458	-	-	3e-1	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.18	2e-6	52	Vitis vinifera	1608056_at	CF511408	hypothetical protein LOC100254490	-	4e-31	At1g08880	H2AXA	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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